Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1463
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              31   0.96 
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 30   1.3  
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   29   2.2  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_58377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5)                   28   5.1  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  

>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +2

Query: 236 DNDLSNNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAPAQHADDSMD 415
           +ND S N  Y+  D +++ ++  T   L     L       + RRL      QH   +  
Sbjct: 79  NNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRRLQHKTTTTA 138

Query: 416 P--LDVPQGSTAP-QRTARHGRYSRTEHVMT 499
           P     P  +TAP   TA +  YS  +   T
Sbjct: 139 PTTTTAPATNTAPATTTAPNNDYSTNDDYRT 169


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 409 HGPSRRTTRKHCSTTHRPTWSVFQDGTRHD*WLLALKAPTFHWEPQH 549
           H P R T R+ C + HR T      G     WLL  +APT    P +
Sbjct: 31  HHP-RHTRRRVCHSRHRSTIRPMVPGGLLSMWLLERRAPTHKTRPNY 76


>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 395 HADDS-MDPLDVPQGSTAPQRTARHGRYSRTEHVMTNGCSRSKL 523
           H+D S ++  +   G+TA     RHG +   EH++ NG     L
Sbjct: 446 HSDKSFVNSREHSSGNTALHMACRHGHFDIVEHLLENGAEVDSL 489


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -1

Query: 498 VMTCSVLEYRPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 367
           V  C  +    CR V+C  V+ C  S+   L    SS  WA  + GSL
Sbjct: 361 VCACRYVRSVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408


>SB_58377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 228 ADSITTYLTMQAITNMTSGHRVITSAQTCFCG*APV 335
           ++S+  YL   ++ + TSG ++++S     CG +PV
Sbjct: 110 SNSVMEYLLSDSVEDSTSGWKLLSSLNILACGESPV 145


>SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5)
          Length = 404

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 TGIVRDEGEGRFDNDLSNNAGYNKYDFWTSGN 295
           TG+  ++G+G +D  L  N G  +Y    +GN
Sbjct: 38  TGLGGNKGKGEYDTGLGGNKGIGEYGTGLAGN 69



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 182 QIIRSSTGIVRDEGEGRFDNDLSNNAGYNKYDFWTSGN 295
           Q  R  TG+  ++G G +   L  N G  +YD    GN
Sbjct: 19  QAPRMCTGLGGNKGIGEYGTGLGGNKGKGEYDTGLGGN 56


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 117  YFISRMNPYSPELNYFLSYQYCRSLGLQLASFETKEKADSI 239
            +FI+  NPY    +  +       LG  + S ETKEK   I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513


>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -1

Query: 486  SVLEYRPCRAVRCGAVLPCGTSRGSMLSS---ACWAGASMGSLRM*LKVALNGR--PVLI 322
            ++ E+RPC   RC +   C  +  S  SS   +C  G  + + R+  + +L+G   P L+
Sbjct: 993  NLYEHRPCARQRCSSTKKCEVTPWSAWSSCRGSCGVGRKVRTRRIIRQSSLSGMTCPSLV 1052

Query: 321  HK 316
             K
Sbjct: 1053 KK 1054


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,054,381
Number of Sequences: 59808
Number of extensions: 469343
Number of successful extensions: 1326
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)