Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1463
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-4|CAA98436.1|  113|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    31   0.64 
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    31   0.84 
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    31   0.84 
Z92832-8|CAB54227.1|   99|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF040651-4|AAB95014.1|  234|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL031627-7|CAA20959.2|  200|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81076-9|CAB03057.1|  372|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z78019-8|CAJ85784.2|  195|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical ...    27   7.9  
AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z74030-4|CAA98436.1|  113|Caenorhabditis elegans Hypothetical
           protein D1054.7 protein.
          Length = 113

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 281 WTSGNNLGTDMFLWMSTGLPFNAT 352
           WT G+  GTD F+W  TG P NA+
Sbjct: 57  WTDGSTTGTDGFIW-ETGEPNNAS 79


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 281 WTSGNNLGTDMFLWMSTGLPFNATFN 358
           WT G+  GTD F+W  TG P N  +N
Sbjct: 119 WTDGSTTGTDGFIW-KTGDPNNYLYN 143


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 209 VRDEGEGRFDNDLSNNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMR 367
           +RD GEG  + D S ++G N  DF +SG++ G    +  S+G     + NY +
Sbjct: 675 LRDSGEGSAEYDASGSSGDNSGDFNSSGSS-GEASGVGESSGSEDQGSGNYKK 726


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 209 VRDEGEGRFDNDLSNNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMR 367
           +RD GEG  + D S ++G N  DF +SG++ G    +  S+G     + NY +
Sbjct: 675 LRDSGEGSAEYDASGSSGDNSGDFNSSGSS-GEASGVGESSGSEDQGSGNYKK 726


>Z92832-8|CAB54227.1|   99|Caenorhabditis elegans Hypothetical
           protein F31D4.9 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 345 LNGRPVLIHKNMSVPRLLPDVQKSYLL*PALLDKSLSNLPS-PSSRTMPVEDLMICSTD 172
           L+G  +++HK +S  + + D+Q+  +  P L+    S + S P+S  + + D   CS +
Sbjct: 5   LSGVIIVLHKELSCRKEITDLQEISIALPDLMLSPKSKIVSDPASSKIDLNDRTTCSAE 63


>AF040651-4|AAB95014.1|  234|Caenorhabditis elegans Hypothetical
           protein W04H10.4 protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 281 WTSGNNLGTDMFLWMSTGLPFNATFN 358
           WT G+  GTD F+W   G P N  +N
Sbjct: 177 WTDGSTTGTDGFIW-KAGDPNNYQYN 201


>AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical
           protein Y68A4B.1 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 281 WTSGNNLGTDMFLWMSTGLPFNATFNY 361
           WT G+  GTD FLW + G P N    Y
Sbjct: 87  WTDGSTTGTDGFLWRN-GDPNNGGIYY 112


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
           protein C31G12.2 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 281 WTSGNNLGTDMFLWMSTGLPFNA 349
           WT G+  GTD ++W S G P NA
Sbjct: 138 WTDGSTTGTDGWIWRS-GEPNNA 159


>AL031627-7|CAA20959.2|  200|Caenorhabditis elegans Hypothetical
           protein Y102A5C.16 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 281 WTSGNNLGTDMFLWMSTGLPFNATFN 358
           WT G+  G+D F+W     P N + N
Sbjct: 143 WTDGSATGSDAFIWNVATEPNNGSLN 168


>Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical
           protein R13H4.3 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 511 RAAISHDVFRPGIPTMSGGALWSSASLWYV*RVHA 407
           RA +S   F  G+   SGG  WSS   W    VHA
Sbjct: 100 RALVSAQAFLYGLYPASGGYQWSSDIDWQPLPVHA 134


>Z81076-9|CAB03057.1|  372|Caenorhabditis elegans Hypothetical
           protein F35C5.8 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 526 TFHWEPQHCGEIKDFICEQTRCYYYNY 606
           T  W P  C     FICEQ  C   NY
Sbjct: 342 TTAWTPVSCANNFRFICEQVACDTDNY 368


>Z78019-8|CAJ85784.2|  195|Caenorhabditis elegans Hypothetical
           protein ZK863.9 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 174 QYCRSLGLQLASFETKEKADSI 239
           Q C  LG  LASFET ++A S+
Sbjct: 83  QECVELGAHLASFETTDEATSV 104


>AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical
           protein Y48B6A.4 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 35  IMSRAARSFPQPSRSSKNNNDTTGWRSVFYL*DESVQPRAQL 160
           +MSR   +F +P R  + N++  G      L ++  QPR +L
Sbjct: 348 LMSRPEHTFCRPRREEEKNDEEAGGDGTKLLENQQHQPRPRL 389


>AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical
           protein Y68A4B.2 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 281 WTSGNNLGTDMFLW-MSTGLPFNATFN 358
           WT G+  GTD F W +S G P N   N
Sbjct: 132 WTDGSATGTDGFNWRLSDGEPNNLFLN 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,177
Number of Sequences: 27780
Number of extensions: 322386
Number of successful extensions: 874
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)