Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1463
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste...    29   2.4  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   4.2  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   4.2  
At3g13220.1 68416.m01654 ABC transporter family protein contains...    28   5.5  
At1g33440.1 68414.m04139 proton-dependent oligopeptide transport...    27   7.3  
At2g35550.2 68415.m04355 expressed protein                             27   9.6  
At2g35550.1 68415.m04354 expressed protein                             27   9.6  

>At3g20520.1 68416.m02598 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to glycerophosphodiester phosphodiesterase
           (GI:1399038) [Borrelia hermsii]
          Length = 729

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 303 PRLLPDVQKSYLL*PALLDKSLSNLPSPSSRTMP 202
           P LLP  +  Y   PALLD  ++  P P +R+ P
Sbjct: 667 PMLLPPAEAPY---PALLDSDVTEPPLPEARSQP 697


>At5g54650.2 68418.m06805 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 5    LIRQYAVLLDIMSRAARSFP-QPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVL 181
            ++R + ++LD   +  R    +P R ++    T    S       S+ PR +LFP ++  
Sbjct: 831  IVRDFLIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITER 890

Query: 182  QIIRSST 202
            ++ +SS+
Sbjct: 891  RVDQSSS 897


>At5g54650.1 68418.m06804 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 5    LIRQYAVLLDIMSRAARSFP-QPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVL 181
            ++R + ++LD   +  R    +P R ++    T    S       S+ PR +LFP ++  
Sbjct: 831  IVRDFLIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITER 890

Query: 182  QIIRSST 202
            ++ +SS+
Sbjct: 891  RVDQSSS 897


>At3g13220.1 68416.m01654 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to white
           protein GB:Q27256 [Anopheles gambiae]
          Length = 685

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -1

Query: 597 VIATRLLAYEVLDLAAVLRLPVEGRSFEREQPLVMTCSVLEYRPCRAVRCGAVLPCGTSR 418
           V+  +L   E L  AA LRLP      ++   + M    L    CR  R G     G S 
Sbjct: 172 VLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISG 231

Query: 417 G 415
           G
Sbjct: 232 G 232


>At1g33440.1 68414.m04139 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 601

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
 Frame = +2

Query: 239 NDLSNNAGYNKYDFWTSGNNLGTDM---FLWMSTGLPFNATFNYM---RRLPIDAPAQHA 400
           N ++++ G    + W   N+L  D    F W+   L F   FNY+   R    D  A H 
Sbjct: 517 NRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWYSCDPSATHH 576

Query: 401 DDSMDPLDVPQGSTAPQRTARHGR 472
              ++ L+  +       T    R
Sbjct: 577 SAEVNSLEALENGEIKDSTTEKPR 600


>At2g35550.2 68415.m04355 expressed protein
          Length = 226

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 35  IMSRAARSFPQPSRSSKNNNDTTGWRSVFYL*DESVQPRAQ 157
           +M   +  FP P R S+N+ +T   +SV     ++++P+ Q
Sbjct: 53  VMVPQSHLFPPPIRDSRNDTETVKQKSVNQSPSKALKPKPQ 93


>At2g35550.1 68415.m04354 expressed protein
          Length = 271

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 35  IMSRAARSFPQPSRSSKNNNDTTGWRSVFYL*DESVQPRAQ 157
           +M   +  FP P R S+N+ +T   +SV     ++++P+ Q
Sbjct: 98  VMVPQSHLFPPPIRDSRNDTETVKQKSVNQSPSKALKPKPQ 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,863
Number of Sequences: 28952
Number of extensions: 295375
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)