Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1462
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 208 6e-55
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 110 2e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 4e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 102 4e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 4e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.088
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.36
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.47
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.4
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 4.4
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 5.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 208 bits (508), Expect = 6e-55
Identities = 103/142 (72%), Positives = 108/142 (76%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+F
Sbjct: 65 LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PGRD 615
ETFN PA YVAIQAVLSLYASGRTT P + P GRD
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Query: 616 LTDYLMKILTERGYSFTTTAER 681
LTDYLMKIL ERGY+F+TTAER
Sbjct: 185 LTDYLMKILMERGYTFSTTAER 206
Score = 129 bits (311), Expect = 4e-31
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 110 bits (264), Expect = 2e-25
Identities = 59/144 (40%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MF
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT---VSCWTPATVSPTPCPSTKDTHSPTPSCVWT*P 606
E + +YVAIQAVLSLYA G ++ V T S H V
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV---A 181
Query: 607 GRDLTDYLMKILTERGYSFTTTAE 678
GRD T YL+ +L +GY+F TA+
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTAD 205
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 74 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 247
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 248 R 250
R
Sbjct: 62 R 62
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 605
G+V+DSGDGV+H VP+YE L H + RLD+A
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (253), Expect = 4e-24
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIM 432
L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ +
Sbjct: 69 LKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYF 128
Query: 433 FETFNTPAMYVAIQAVLSLYASGRTT---VSCWTPATVSPTPCPSTKDTHSPTPSCVWT* 603
+ET N PA+ ++Q VL+LYAS RTT + C T S P P+
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIPSAIQQEEI 185
Query: 604 PGRDLTDYLMKILTERGYSFTTTAER 681
GRD+TDYL L + G+ ++AE+
Sbjct: 186 GGRDVTDYLQLQLRKSGHELVSSAEK 211
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 102 bits (245), Expect = 4e-23
Identities = 63/153 (41%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Frame = +1
Query: 259 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 438
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 439 TFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTP--------SCV 594
+FN +Y+A+QAVL+L AS T S T +++ T S P S +
Sbjct: 149 SFNCAGLYIAVQAVLALAAS--WTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206
Query: 595 WT*P--GRDLTDYLMKILTERGY--SFTTTAER 681
T P GRD+T ++ +L +R S TAER
Sbjct: 207 KTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 235
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.3 bits (167), Expect = 1e-13
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
E+ PA Y+A Q + +ASG+ T
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGT 147
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 172
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.7 bits (148), Expect = 2e-11
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 450
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 451 PAMYVAIQAVLSLYASGRTTVS 516
P++ I + S Y + + + S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 181
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 501 SYHGIVLDSGDGVSHTVPIYEG 566
S GIVL+ G+ SH +P+ G
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/77 (29%), Positives = 45/77 (58%)
Frame = +1
Query: 280 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 459
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 460 YVAIQAVLSLYASGRTT 510
Y+ QAV +A+ ++T
Sbjct: 134 YLTKQAVCVAFANSKST 150
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 438
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 439 TFNTPAMYVAIQAVLSLYASG 501
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.088
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 331 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 474
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 131 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 253
G+ PRA F ++ P H G+++ M KD G+E S +G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 228 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 67
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.5 bits (63), Expect = 0.47
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 269 YLRVRYLFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 150
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -1
Query: 262 GSGTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 89
G G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 231 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 115
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 373 LLTEAPLNPKANREKMTQIMFETFN 447
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 556 STKDTHSPTPSCVWT*PGRDLTDYLMKILTERG-YSFTTTA 675
S D P P + P R+L +M ++TE G Y+ TA
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 216
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 409 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTP 585
RE++ Q+ + P+ Y+ LS Y S + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRSPNSY----------PSLLPSTHSPHSPAP 182
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 505 TTVSCWTPATVSPTPCPSTKDT 570
TT S TPA V P P PST T
Sbjct: 838 TTSSHITPADVHPLPPPSTSTT 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,804
Number of Sequences: 5004
Number of extensions: 68091
Number of successful extensions: 243
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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