Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1462
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 223 1e-58
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 223 1e-58
SB_56| Best HMM Match : Actin (HMM E-Value=0) 223 1e-58
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 223 1e-58
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 5e-50
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 6e-31
SB_54| Best HMM Match : Actin (HMM E-Value=0) 127 7e-30
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 8e-28
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 91 6e-19
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 91 6e-19
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 72 5e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 54 1e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 41 8e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.49
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.65
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 31 1.1
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.5
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 30 2.0
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 30 2.0
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 30 2.0
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 29 2.6
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.6
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 29 3.5
SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08) 29 3.5
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 29 3.5
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 4.6
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.6
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032) 28 6.1
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22) 28 8.0
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 223 bits (545), Expect = 1e-58
Identities = 111/142 (78%), Positives = 113/142 (79%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PGRD 615
ETFN+PAMYVAIQAVLSLYASGRTT P + P GRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRD 185
Query: 616 LTDYLMKILTERGYSFTTTAER 681
LTDYLMKILTERGYSFTTTAER
Sbjct: 186 LTDYLMKILTERGYSFTTTAER 207
Score = 132 bits (320), Expect = 2e-31
Identities = 61/64 (95%), Positives = 63/64 (98%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 SKRG 253
SKRG
Sbjct: 61 SKRG 64
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 223 bits (545), Expect = 1e-58
Identities = 111/142 (78%), Positives = 113/142 (79%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PGRD 615
ETFN+PAMYVAIQAVLSLYASGRTT P + P GRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 616 LTDYLMKILTERGYSFTTTAER 681
LTDYLMKILTERGYSFTTTAER
Sbjct: 185 LTDYLMKILTERGYSFTTTAER 206
Score = 130 bits (313), Expect = 1e-30
Identities = 59/62 (95%), Positives = 62/62 (100%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 223 bits (545), Expect = 1e-58
Identities = 111/142 (78%), Positives = 113/142 (79%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PGRD 615
ETFN+PAMYVAIQAVLSLYASGRTT P + P GRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 616 LTDYLMKILTERGYSFTTTAER 681
LTDYLMKILTERGYSFTTTAER
Sbjct: 185 LTDYLMKILTERGYSFTTTAER 206
Score = 131 bits (316), Expect = 6e-31
Identities = 60/62 (96%), Positives = 62/62 (100%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 223 bits (545), Expect = 1e-58
Identities = 111/142 (78%), Positives = 113/142 (79%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PGRD 615
ETFN+PAMYVAIQAVLSLYASGRTT P + P GRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 616 LTDYLMKILTERGYSFTTTAER 681
LTDYLMKILTERGYSFTTTAER
Sbjct: 186 LTDYLMKILTERGYSFTTTAER 207
Score = 137 bits (331), Expect = 9e-33
Identities = 62/64 (96%), Positives = 64/64 (100%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 SKRG 253
SKRG
Sbjct: 61 SKRG 64
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 185 bits (450), Expect(2) = 5e-50
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
ETFN+PAMYVAIQAVLSLYASGRTT
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTT 150
Score = 132 bits (320), Expect = 2e-31
Identities = 59/64 (92%), Positives = 63/64 (98%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 SKRG 253
SKRG
Sbjct: 61 SKRG 64
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/23 (82%), Positives = 21/23 (91%), Gaps = 2/23 (8%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYE--GYA 572
GIV+DSGDGVSHTVPIYE GY+
Sbjct: 151 GIVMDSGDGVSHTVPIYEERGYS 173
Score = 31.1 bits (67), Expect(2) = 5e-50
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 613 DLTDYLMKILTERGYSFTTTAER 681
D + + I ERGYSFTTTAER
Sbjct: 158 DGVSHTVPIYEERGYSFTTTAER 180
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 131 bits (316), Expect = 6e-31
Identities = 59/62 (95%), Positives = 62/62 (100%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
Score = 99 bits (238), Expect = 2e-21
Identities = 56/92 (60%), Positives = 60/92 (65%)
Frame = +1
Query: 406 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTP 585
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTT P + P
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 586 SCVWT*PGRDLTDYLMKILTERGYSFTTTAER 681
GRDLTDYLMKILTERGYSFTTTAER
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAER 169
Score = 67.7 bits (158), Expect = 8e-12
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 605
GIV+DSGDGV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 113 GIVMDSGDGVTHTVPIYEGYALPHAIIRLDLA 144
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTF 333
LTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 127 bits (307), Expect = 7e-30
Identities = 65/123 (52%), Positives = 83/123 (67%)
Frame = +1
Query: 313 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 492
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 493 ASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PGRDLTDYLMKILTERGYSFTTT 672
ASGRTT + + P P + GRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 673 AER 681
AE+
Sbjct: 2249 AEQ 2251
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 187
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 120 bits (290), Expect = 8e-28
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Frame = +1
Query: 244 QKRY-LTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREK 417
Q RY L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREK
Sbjct: 63 QLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
Query: 418 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVW 597
M ++MFE + +Y+AIQAVL+LYA G T CP + P +
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRL 182
Query: 598 T*PGRDLTDYLMKILTERGYSFTTTAE 678
GRD+T YL+K++ RGY+F TA+
Sbjct: 183 DIAGRDITKYLIKLMLLRGYAFNHTAD 209
Score = 51.2 bits (117), Expect = 8e-07
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 80 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKR 250
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLR 65
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 91.5 bits (217), Expect = 6e-19
Identities = 46/106 (43%), Positives = 65/106 (61%)
Frame = +1
Query: 361 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVS 540
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTT
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 541 PTPCPSTKDTHSPTPSCVWT*PGRDLTDYLMKILTERGYSFTTTAE 678
P + P GRD++ YL +L + G+ F +++E
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSE 231
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 91.5 bits (217), Expect = 6e-19
Identities = 50/85 (58%), Positives = 56/85 (65%)
Frame = +1
Query: 427 IMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*P 606
IMFE FN+PA+YVAIQAVLSLYASGRTT + P + P
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 607 GRDLTDYLMKILTERGYSFTTTAER 681
GRDLTDYLMK++TERGYSFTTTAER
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAER 85
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 605
G+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 29 GVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 71.7 bits (168), Expect = 5e-13
Identities = 29/79 (36%), Positives = 52/79 (65%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 450
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 451 PAMYVAIQAVLSLYASGRT 507
PA ++ +VL+ +A+GR+
Sbjct: 63 PAFFLCKNSVLTAFANGRS 81
Score = 35.5 bits (78), Expect = 0.040
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 507 HGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 605
+G+V+DSG + VP+++GY L AI+R LA
Sbjct: 82 NGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLA 114
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 187
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 226
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 227 GDEAQSKRG 253
GD A +K G
Sbjct: 753 GDAAVAKSG 761
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 241 EQKRYLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 378
++ Y T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 292 DKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 498 RSYHGIVLDSGDGVSHTVPI 557
R+ G V+DSGDGV+H +P+
Sbjct: 353 RTLTGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 184 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 68
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 498 RSYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 605
R+ G V+DSGDGV+H +P+ EGY + I + +A
Sbjct: 59 RTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIA 94
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 187 GRDGRYGTEGLLCRR*-GTEQKRYLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 357
GR G + GL G+ + L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 358 EEHPVLLTEAPLNPKANRE 414
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 241 EQKRYLTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 342
E K Y L Y P + G + NWD ++IW +TF E
Sbjct: 280 ECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 74 EVAALVVDNGSGMCKAGFAGDDAPRAV 154
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = -3
Query: 365 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMG--YLRVRYLFCSVPHLLHKSPSVPYRPS 192
CS + + C + ++V CS Y+ V + CS + H+ PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 191 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 99
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 387 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 479
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 216 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 411 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 439 TFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPS 588
T TP++ + QA S+ S T S + V+P+ ST+ S TPS
Sbjct: 1840 THLTPSVASSTQAASSVILSAEVTTSVTSSTQVTPSVASSTQAATSVTPS 1889
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +1
Query: 379 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPS 558
T+ + ++ + T + T P++ + Q S+ +S + T S + +P+ PS
Sbjct: 1870 TQVTPSVASSTQAATSVTPSTQGMPSVAPSTQMTPSVASSTQVTPSVASSTQAAPSVTPS 1929
Query: 559 TKDTHSPTPS 588
T T S TPS
Sbjct: 1930 TLMTPSVTPS 1939
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 274 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 252 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 128 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -2
Query: 279 FDGVFEGQVPLLLCASSPT*ESFCPIPTITP*WRGLPT 166
+DGV + ++ LLL +SSP S PI TP +GL T
Sbjct: 273 YDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C ++LSH + H M D +HG RS SCET L T
Sbjct: 176 ICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 346 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWT 525
++A + +P + E N K + +K+ Q M +T + + ++ +A + W
Sbjct: 866 KIASKHNPEMTEEMRANLKEHLDKINQRMNDTMT---LLYNMPKIMRKFAF---ELPNWA 919
Query: 526 PATVSPTPCPSTKDTHSP-TPSCV 594
P PT P+ K T +P TPS V
Sbjct: 920 PKIPLPTEPPTEKMTEAPTTPSAV 943
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 469 IQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*P 606
+ VLS++ G T+ +P +PTP P K T +PTPS T P
Sbjct: 203 VSIVLSMF-DGNMTIFGLSPD--APTPPPPVKTTAAPTPSPPQTPP 245
>SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Frame = +3
Query: 405 QQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHGI--VLD-SGDGVSHTVP-IYEGYA 572
Q+ D P H + I + RH + H + HG ++D +H +P +G +
Sbjct: 83 QRLIDYPQHAKVIDYPRHAKAHRLSTARKGLSITHGAQRLIDYPRHAKAHQLPTARKGLS 142
Query: 573 LPHAILRLDLAR-SRPHRLP-----HEDPHRARLLVHYHRR 677
+ H +D R ++ HRLP H A+ L++Y R
Sbjct: 143 ITHDAQMIDFPRLAKAHRLPTARKGSSITHGAQRLINYPLR 183
>SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08)
Length = 240
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 505 TTVSCWTPATVSPTPCPSTKDTHSPT 582
TT SC P T +PT P+ T +PT
Sbjct: 199 TTCSCVEPPTQAPTQAPTQAPTQAPT 224
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 431 CSKHSTRPPCTSPSKPCSRCTRPVVPRYRAG 523
C H+ R P T+PS PC Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -1
Query: 247 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 83
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 82 GNFFVAHLE 56
G V L+
Sbjct: 521 GQVDVLLLD 529
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 482 SRCTRPVVPRYRAGLRRRCLPHRAHLR-RIRTPPRHPASGLSP 607
SR PR+R RR P++ H R + RTPPRH SP
Sbjct: 64 SRSKSRTPPRHR---RRSRSPNKKHSRSKSRTPPRHRRRSRSP 103
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +1
Query: 328 TFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 507
T E VAPE + E ++P+ T + ET TP VA + ++ +
Sbjct: 4182 TMAPETTVAPET--TMAAETTVSPETTEASGTTVASETTTTPETTVAPETTMAPETTVAL 4239
Query: 508 TVSCWTPATVSPTPCPSTKDTHSP 579
+ TV+P + + T +P
Sbjct: 4240 ETTMAPETTVAPETTIAPESTEAP 4263
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032)
Length = 216
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 444 QHARHVRRHPSRALAVRVRSYHGIVLDSGDGVSHTVPIYEG 566
QH RHV S ++ S V D D + +P YEG
Sbjct: 25 QHERHVGHGKSEGERAQIDSLQKYVRDIFDHIDQIIPKYEG 65
>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
Length = 1709
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 446 TRPPCTSPSKPCSRCTRPVVPRYRAGLRRRCLPHRAHLRRIRTP 577
TR T +PCS TR V+P + R LP R + ++ P
Sbjct: 1531 TRLLATKDFQPCSAKTRRVIPSFTVWRVRGRLPLRFWINIVKNP 1574
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 447 HARHVRRHPSRALAVRVRSYHGIVLDSGDGVSHTVPI 557
+ARH R PSR +R+ Y D DG++ ++ I
Sbjct: 42 NARHPRVEPSRCRGLRLLDYCSDKFDDDDGLTDSLDI 78
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 583 AWGSAYPS*MGTVWETPSPESSTIPW 506
+W S P T W +PSP+ T W
Sbjct: 113 SWSSPSPKYKTTSWTSPSPQYKTTSW 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,250,506
Number of Sequences: 59808
Number of extensions: 614462
Number of successful extensions: 2405
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2366
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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