Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1461
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    77   2e-15
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   3.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   4.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   5.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   5.2  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   6.9  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    25   9.1  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    25   9.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   9.1  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   9.1  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 32/42 (76%), Positives = 37/42 (88%)
 Frame = +2

Query: 512 PWLDASDYPRMVASADLGVCLHTSSSGLDLPMKVVDMFGAGL 637
           PWL   DYP+++A ADLGVCLHTSSSGLDLPMKVVD+FG G+
Sbjct: 309 PWLSIEDYPQVMACADLGVCLHTSSSGLDLPMKVVDLFGCGV 350



 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 27/60 (45%), Positives = 38/60 (63%)
 Frame = +3

Query: 297 PDRPGIIFSSTSWTPDEDFTLLMEALQVYETTYSLTKVLPRLICVITGKGPMREYYRQLV 476
           P    ++ +STSWTPDED  +L EAL  Y+ T       P+L+ +ITGKGPM+E + Q +
Sbjct: 241 PSSTKLLITSTSWTPDEDIYILWEALNEYDKTLD----TPKLLVLITGKGPMKEEFSQYI 296



 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 4   VRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINAA-VLYDRPPKIFKPLTLLEKHDW 180
           V++ +  E++  + ++ +L V+  MK D+LQ W +N   V YDRPP  F P+   +K   
Sbjct: 172 VKLLKIYEKYMARGAYAHLTVSKRMK-DVLQTWGMNPCYVCYDRPPNHFTPIKNEQKKQM 230

Query: 181 YVK 189
            +K
Sbjct: 231 SIK 233


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 156 QWLEYLRWPVVKDSSIDVP 100
           +W +Y  W V KD +I+ P
Sbjct: 116 EWFDYFAWTVPKDPNINTP 134


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -2

Query: 252 LESFIRFLVFGCSKHGVVLSHLDVPVVLLQQRQWLEYLRWPVVKDSSIDVPILQQ 88
           LE F+R LV       + L   D  V ++   QW++YLR  V+  +S   P++Q+
Sbjct: 364 LEMFVRLLV------AIFLKDRDKIVNMVSHEQWVKYLRSDVL--ASYRQPLVQK 410


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 368  FHQESEIFIRSPAGAAEDDAGSIGSW 291
            +H ++ IF+ +P G+ +  A  + +W
Sbjct: 1147 YHTDTNIFVGAPTGSGKTMAAELATW 1172


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +3

Query: 318 FSSTSWTPDEDFTLLMEALQVYETTYSLTKVLPRLICVITGKGPMREYYRQLVDSK 485
           F + +W+P E   +++++ +VYETT      +     ++       E Y  L++ +
Sbjct: 225 FVTNNWSPSEYEDVMVKSNKVYETTLKRNAKIFNKELLLNSANHSLEAYMDLINDE 280


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 627 PNMSTTFIGRSRPEELV 577
           P +STT +G S+PE++V
Sbjct: 293 PYVSTTILGASKPEQIV 309


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 592 TGGAGVQAHSEVSTSHHSWVVGRVEPGCTTST 497
           + GAG  +HSE +T  H  V   V  G + S+
Sbjct: 107 SAGAGASSHSEETTPSHE-VTSNVSSGSSASS 137


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 186 DVPVVLLQQRQWLEYLRW 133
           D+  V++QQR W   +RW
Sbjct: 209 DIENVVIQQRSWTSPIRW 226


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
 Frame = +3

Query: 252  ETAFTEYVDGVLKP-RPDRPGIIFSSTSWTPDEDFTLLMEALQV-YETT------YSLTK 407
            E  F EY D ++KP R      + S   ++  +  T L+ AL   Y +T      Y++ +
Sbjct: 997  ENVFAEYCDSLIKPGRESAIASLKSGLFFSAAQGVTFLINALTFWYGSTLMRKGEYNIVQ 1056

Query: 408  VLPRLICVITGKGPMREYYRQLVDSKKWKNV--DVVHPGSTRPTTQEW 545
                 I ++ G     +++    D  K K    ++ +   ++P    W
Sbjct: 1057 FYTCFIAIVFGIQQAGQFFGYSADVTKAKAAAGEIKYLSESKPKIDTW 1104


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 204 VVLSHLDVPVVLLQQRQWLE 145
           ++L H+D  V LLQ+R+W +
Sbjct: 288 MLLEHVDKAVQLLQKRKWAD 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,340
Number of Sequences: 5004
Number of extensions: 58357
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)