Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1461
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 75 4e-14
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 75 4e-14
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 30 1.3
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456... 29 2.3
03_05_0862 + 28353235-28354431 29 2.3
10_02_0095 + 5243703-5243965,5244061-5244173,5244432-5244481,524... 29 4.1
03_05_0789 + 27718651-27718732,27718862-27718929,27719614-27719682 29 4.1
02_05_0033 + 25250312-25250563,25251469-25251540,25251925-252520... 28 5.4
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 28 7.1
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 7.1
02_05_0370 - 28356862-28356894,28357542-28357586,28357854-283579... 28 7.1
02_02_0632 - 12413660-12413677,12413839-12413870,12414377-124144... 28 7.1
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 27 9.4
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 27 9.4
04_04_1147 + 31261435-31261763,31261915-31262736,31262934-312629... 27 9.4
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 27 9.4
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/44 (77%), Positives = 37/44 (84%)
Frame = +2
Query: 506 RTPWLDASDYPRMVASADLGVCLHTSSSGLDLPMKVVDMFGAGL 637
RT WL + DYP ++ SADLGV LHTSSSGLDLPMKVVDMFG GL
Sbjct: 293 RTMWLASEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL 336
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 21/79 (26%)
Frame = +3
Query: 327 TSWTPDEDFTLLMEALQVYETTYSLTK---------------------VLPRLICVITGK 443
+S TPDEDF++L+EA +Y+ + T V PRL+ +ITGK
Sbjct: 212 SSLTPDEDFSILLEAALMYDRRVAATLGEDDSMDEGKLWIDIKNGKQFVYPRLLFIITGK 271
Query: 444 GPMREYYRQLVDSKKWKNV 500
GP R+ Y + + K + V
Sbjct: 272 GPDRKKYEEQIKRLKLRRV 290
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 25 ERFFGQSSHFNLCVTYAMKEDLLQNWNINA 114
E+ FG+ + CVT AMK +L + W INA
Sbjct: 164 EKHFGRMADGAFCVTKAMKHELDKKWGINA 193
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/44 (77%), Positives = 37/44 (84%)
Frame = +2
Query: 506 RTPWLDASDYPRMVASADLGVCLHTSSSGLDLPMKVVDMFGAGL 637
RT WL + DYP ++ SADLGV LHTSSSGLDLPMKVVDMFG GL
Sbjct: 331 RTMWLASEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL 374
Score = 68.1 bits (159), Expect = 5e-12
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 21/103 (20%)
Frame = +3
Query: 255 TAFTEYVDGVLKPRPDRPGIIFSSTSWTPDEDFTLLMEALQVYETTYSLTK--------- 407
T FT +VDG + +P+RP ++ SSTSWTPDEDF++L+EA +Y+ + T
Sbjct: 226 TVFTSWVDGEIFLKPNRPALVVSSTSWTPDEDFSILLEAALMYDRRVAATLGEDDSMDEG 285
Query: 408 ------------VLPRLICVITGKGPMREYYRQLVDSKKWKNV 500
V PRL+ +ITGKGP R Y + + K + V
Sbjct: 286 KLWIDIKNGKQFVYPRLLFIITGKGPDRMKYEEQIKRLKLRRV 328
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 25 ERFFGQSSHFNLCVTYAMKEDLLQNWNIN 111
E+ FG+ + CVT AMK +L Q W IN
Sbjct: 164 EKHFGRMADGAFCVTKAMKHELDQKWGIN 192
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -2
Query: 624 NMSTTFIGRSRPEELVCRHTPRSALATILG*SDASSQGVRHPRSST-SW---SPPAGGST 457
N S+T+ S P E T S + + +ASS PR + SW PP GG+
Sbjct: 452 NSSSTYSSSSCPPEPTSS-TSGSTSSWVPPRDNASSWAPPPPRGNPPSWVPLPPPPGGNA 510
Query: 456 PSWGP 442
PSW P
Sbjct: 511 PSWVP 515
>04_04_0028 -
22243272-22243577,22244564-22244713,22244919-22245656,
22247233-22247331,22247541-22247933,22248806-22248961
Length = 613
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 414 PRLICVITGKGPMREYYRQLVDSKKWKNV 500
P LIC I K P +E R V S KW+++
Sbjct: 216 PDLICTILSKLPQKEAIRTSVLSSKWRSM 244
>03_05_0862 + 28353235-28354431
Length = 398
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 270 YVDGVLKPRPDRPGIIFSSTSWTPDE 347
+VDG +PRPDRP ++ + + PD+
Sbjct: 41 FVDGRGRPRPDRPWLLLPADAPDPDD 66
>10_02_0095 +
5243703-5243965,5244061-5244173,5244432-5244481,
5244629-5244862,5245394-5245543,5245816-5245836,
5245920-5246087
Length = 332
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 330 SWTPDEDFTLLMEALQVYETTYSLTKVLPRLICVITGKG---PMREYYRQLVDSKKWKNV 500
+W+ + + L+ AL ++ YSL K+ R + + T + P RE +Q+++S ++
Sbjct: 54 AWSGETPLSRLVGALIAFKPLYSLMKLASREVIIRTAEKSNVPWREMTKQVLESDVYEVF 113
Query: 501 D 503
D
Sbjct: 114 D 114
>03_05_0789 + 27718651-27718732,27718862-27718929,27719614-27719682
Length = 72
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -1
Query: 349 SSSGVQLVLLKMMPGLS-GRGFRTPSTYSVKAVSRKLHSVSRVW 221
S+ G Q PGL+ GRGFRT V H + R W
Sbjct: 8 STQGSQAGRAHTQPGLTIGRGFRTSPPDVFAGVGTSAHGLHRAW 51
>02_05_0033 +
25250312-25250563,25251469-25251540,25251925-25252069,
25253449-25253558,25253665-25254079,25254166-25254413
Length = 413
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 461 LPPAGGLQEVEE---RGCRTPWLDASDYPRMVASADLGVCLHTSSSGLDLPMKVVDMF-G 628
+ P+ GL+ ++ RG RT A+ P A + L TSSSGL+ P VV+ F G
Sbjct: 241 ISPSEGLRNRKQSNARGSRTGGTTAAQNPAQGAESSL-----TSSSGLEQPPMVVEHFQG 295
Query: 629 AG 634
+G
Sbjct: 296 SG 297
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 91 LQNWNINAAVLYDRPPKIFKPLTLLEKHDWYVKMAQNYPMFGASKHEKPNEAFEKLPLLS 270
L NW+ + PP+ L + W+ + ++ + +HEK +EAF L LS
Sbjct: 2118 LNNWSGTVKETINLPPQDGCILASMSMSSWFTRSSK---LRIGLQHEKGSEAFIDLEALS 2174
Query: 271 MWTAF 285
+T F
Sbjct: 2175 GFTEF 2179
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 321 SSTSWTPDEDFTLLMEALQVY 383
S TSWT DE+ LL+EAL+++
Sbjct: 339 SGTSWT-DEETLLLLEALEIF 358
>02_05_0370 -
28356862-28356894,28357542-28357586,28357854-28357923,
28357934-28358009,28358078-28358118,28358199-28358254
Length = 106
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 420 LICVITGKGPMREYYRQLVDSKKWK 494
L+C G Y+R+++DS++W+
Sbjct: 56 LLCKAAGTKKSNPYFREIIDSQRWQ 80
>02_02_0632 -
12413660-12413677,12413839-12413870,12414377-12414494,
12414794-12414860,12416098-12416237,12416378-12416470,
12416581-12416643,12418070-12418120,12419508-12419606,
12419876-12420012,12420121-12420219,12420346-12420523
Length = 364
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 497 VLPLLGVHQLAVVLPHGALAGDHADQTRK 411
VL +LGVH VL HG GDH ++R+
Sbjct: 63 VLEVLGVHVEPAVLGHGG-RGDHGHRSRQ 90
>08_01_0162 -
1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +3
Query: 261 FTEYVDGVLKPRPDRPGIIFSSTSWTPDEDFTLLMEALQVYETTYSLT 404
F+ + D + P P + F+ T++ PDE + +E + +S +
Sbjct: 513 FSVFCDDLYSPAPVALALTFNHTNFGPDEQTNIRLEGDAAFSADFSFS 560
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 165 GEARLVRQDGSELPHVWSIQ 224
G RL DG+ELP+ W+I+
Sbjct: 1785 GSVRLATGDGTELPNPWNIE 1804
>04_04_1147 +
31261435-31261763,31261915-31262736,31262934-31262970,
31262987-31263028,31263092-31263179,31264344-31264486
Length = 486
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 565 SEVSTSHHSWVVGRVEPGCTTSTFFHFLESTSWR 464
S+ SHHSWV G V +H + WR
Sbjct: 132 SQRRNSHHSWVRGSVNDVLIPIESYHQFDPFGWR 165
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 389 NLLVNQSSSASDLRDHRQGPHEGVLPPAGGLQEVEERGCRTPWLDASDYPRMVASADLG 565
N+ + ++ S LR+ + H V+ P GG+ + R T W A + R++ + G
Sbjct: 155 NVALPRNGSDPLLREWVKPGHNPVIVPEGGINATQFRDPTTAWRGADGHWRLLVGSLAG 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,943,660
Number of Sequences: 37544
Number of extensions: 443947
Number of successful extensions: 1408
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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