Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1461
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40578| Best HMM Match : Pkinase (HMM E-Value=2.2e-11)               30   1.8  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    28   5.5  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_23173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_51722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_40578| Best HMM Match : Pkinase (HMM E-Value=2.2e-11)
          Length = 385

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 518 LDASDYPRMVASADLGVCLHTSSSGLDLPM 607
           LD S YP  +   D G CL  +  GL LP+
Sbjct: 130 LDTSVYPPRLVICDFGCCLADTRQGLKLPL 159


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 599  GRDRRSWCAGTLRGQH*PPFLGSRTRRAR-VYDIHVLPLL 483
            G DR  WCAGT+RG      +G R  R R   +I + P L
Sbjct: 1486 GVDRYIWCAGTMRGS--CDVIGERVVRDRTAVNIQISPPL 1523


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 404  QSSSASDLRDHRQGPHEGVLPPAGGLQEVEERGCRTPWLDA-SDYPRMVASADLGVCLHT 580
            + S AS+ R HR   H   LP  G L+ + ++   T   +  +D PRM A  DL + L  
Sbjct: 2956 KQSLASNQR-HRGLDHREDLPKRGALRTLCKKPKHTFLKELRADTPRMAAILDLSLDLFL 3014

Query: 581  SSSGLDLPMKVVDMF 625
             +S      +++D++
Sbjct: 3015 FTSEYTQEAQIIDLY 3029


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 219 CSKHGVVLSHLDVPVVLLQQRQWLEYLRWPVVKDSSIDVP 100
           C    V LSHL    + L    WL+ L  PV+    ++VP
Sbjct: 150 CGAGSVWLSHLKKDKLKLPATYWLKDLEVPVLPSPPVEVP 189


>SB_23173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 345 EDFTLLMEALQVYETTYSLTKVLPRLICVITGKGPMREYYRQLVDS 482
           E+F+L + + +     YSL ++L     VI  + P    YR+LV S
Sbjct: 36  EEFSLELRSYRPQRHKYSLVEILMAAKGVINTRDPSGSTYRELVTS 81


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 180 PVVLLQQRQWLEYLRWPVVKDSS----IDVPILQQIFLHGIGDTEIEVRRL 40
           P+ LL  RQWL++ +W  +KD+S    +D+ IL  +   G G   I  R L
Sbjct: 823 PIELL--RQWLDHWQWYDLKDTSPIHLVDIQILAAMGPPGGGRNPITPRFL 871


>SB_51722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 345 EDFTLLMEALQVYETTYSLTKVLPRLICVITGKGPMREYYRQLVDS 482
           E+F+L + + +     YSL ++L     VI  + P    YR+LV S
Sbjct: 249 EEFSLELRSYRPQGQKYSLVEILMAAEGVINTRDPSGSTYRELVTS 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,742,254
Number of Sequences: 59808
Number of extensions: 479139
Number of successful extensions: 1944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1944
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)