Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1461
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-6|AAC77507.1| 487|Caenorhabditis elegans Hypothetical pr... 81 7e-16
U53339-1|AAA96197.3| 199|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF099913-7|AAC68747.1| 226|Caenorhabditis elegans Hypothetical ... 29 3.7
Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 28 6.4
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 28 6.4
Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical p... 27 8.5
Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical pr... 27 8.5
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 27 8.5
AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical ... 27 8.5
>U00043-6|AAC77507.1| 487|Caenorhabditis elegans Hypothetical
protein T26A5.4 protein.
Length = 487
Score = 81.0 bits (191), Expect = 7e-16
Identities = 37/56 (66%), Positives = 46/56 (82%), Gaps = 5/56 (8%)
Frame = +2
Query: 479 LQEVEERGCR-----TPWLDASDYPRMVASADLGVCLHTSSSGLDLPMKVVDMFGA 631
LQE+ E+ + TPWL+A DYP+++ASADLG+ LHTS+SGLDLPMKVVDMFGA
Sbjct: 313 LQEIHEKNLKNVDVLTPWLEAEDYPKILASADLGISLHTSTSGLDLPMKVVDMFGA 368
Score = 76.6 bits (180), Expect = 1e-14
Identities = 37/80 (46%), Positives = 52/80 (65%)
Frame = +3
Query: 276 DGVLKPRPDRPGIIFSSTSWTPDEDFTLLMEALQVYETTYSLTKVLPRLICVITGKGPMR 455
+GV++ RP + SSTSWTPDE F +L++AL Y+ T LPR++ +ITGKGP++
Sbjct: 254 NGVVQLLTTRPIVFLSSTSWTPDERFEILLDALVAYDKTIG----LPRVLMIITGKGPLK 309
Query: 456 EYYRQLVDSKKWKNVDVVHP 515
Y Q + K KNVDV+ P
Sbjct: 310 AKYLQEIHEKNLKNVDVLTP 329
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +1
Query: 1 LVRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINAAVLYDRPPKIFKPLTLLEKHDW 180
+VR E G+ S +NLCVT AM+ DL+ W I A+ YDRPP T+ E HD
Sbjct: 171 IVRCVGFLEGLCGKLSDYNLCVTNAMRRDLMDRWGIRASTFYDRPP---TDTTIQEIHDL 227
Query: 181 YVKMAQ 198
Y++++Q
Sbjct: 228 YLRLSQ 233
>U53339-1|AAA96197.3| 199|Caenorhabditis elegans Hypothetical
protein F58A6.2 protein.
Length = 199
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 246 SFIRFLVFGCSKHGVVLSHLDVPVVLLQQRQWL 148
+FI FLV GCS HG++L L Q QWL
Sbjct: 60 AFICFLVGGCSSHGLILYSL---YSTRLQTQWL 89
>AF099913-7|AAC68747.1| 226|Caenorhabditis elegans Hypothetical
protein C29F9.5 protein.
Length = 226
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Frame = +3
Query: 414 PRLICVITGKGPMREYYRQLVDSKKWKNVDVVHPGSTRPTTQEWWLVLTSEC-ACTP--- 581
P +C I M+E + + K+ + VH S+R W EC C P
Sbjct: 36 PHAMCKIQDCVIMKEVLKHMTSCKEGPKCNSVHCASSRTILSHWKKCFNEECPVCKPIIE 95
Query: 582 ---APPVSTS 602
APP T+
Sbjct: 96 QRTAPPQDTT 105
>Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical
protein F47H4.4 protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.4
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Frame = +3
Query: 207 HVWSIQTRETE*SFRETAFTEYVD-GVLKPRPDRPGIIFSSTSWTPDEDFTLLMEALQVY 383
H WS+ + + +E FT VD G + + ++S+ E TL E V
Sbjct: 318 HDWSMVMKNQKLKLKELQFTLDVDLGDHQKLYKTIKTVLENSSYLNVEKITL--EGFSVR 375
Query: 384 ETTYSLTKVLPRLIC-VITGKGPMREYYRQLVDSKKWKNVDV 506
E L R + ++ G Y +LVD K+WK V
Sbjct: 376 EIIKILQHCKSRTLEEIVLGSLTDNNYIEKLVDMKQWKEARV 417
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 537 G*SDASSQGVRHPRSSTSWSPPAGGSTPSW 448
G S+ S + + SS+ W PPAG + W
Sbjct: 335 GSSNNRSSFISNAESSSDWRPPAGRTNTDW 364
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 537 G*SDASSQGVRHPRSSTSWSPPAGGSTPSW 448
G S+ S + + SS+ W PPAG + W
Sbjct: 335 GSSNNRSSFISNAESSSDWRPPAGRTNTDW 364
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 537 G*SDASSQGVRHPRSSTSWSPPAGGSTPSW 448
G S+ S + + SS+ W PPAG + W
Sbjct: 335 GSSNNRSSFISNAESSSDWRPPAGRTNTDW 364
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 537 G*SDASSQGVRHPRSSTSWSPPAGGSTPSW 448
G S+ S + + SS+ W PPAG + W
Sbjct: 335 GSSNNRSSFISNAESSSDWRPPAGRTNTDW 364
>Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 276 DGVLKPRPDRPGIIFSSTSWTPD 344
D L P R G IFSS+ WTP+
Sbjct: 351 DNWLTPYNGRKGSIFSSSLWTPE 373
>Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 276 DGVLKPRPDRPGIIFSSTSWTPD 344
D L P R G IFSS+ WTP+
Sbjct: 351 DNWLTPYNGRKGSIFSSSLWTPE 373
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +1
Query: 121 LYDRPPKIFKPLTLLE---KHDWYVKMAQNYPMFGASKH 228
+Y+ I KP+ L K DW +K +FG KH
Sbjct: 649 MYNGKTGIGKPIEFLRGSSKEDWRIKTTSQQKLFGIGKH 687
>AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical
protein Y70G10A.3 protein.
Length = 690
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 26 KDFSVNLLTSISVSPMP*RKICCRIGTSMLLSFTTGHLRYSS-H*RCWRSTT--GTSRW 193
+D S+ + S+S C++ + + TGH+ YS+ H C TT G+S+W
Sbjct: 437 EDLSIEKMHDFSISSTCNADCHCKMEWNPVCDRNTGHMYYSACHAGCTGRTTIDGSSQW 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,024
Number of Sequences: 27780
Number of extensions: 333866
Number of successful extensions: 966
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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