Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1461
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.61 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.81 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 351 FTLLMEALQVYETTYS-LTKVL---PRLICVITGKGPMR--EYYRQLVDSKKWKN 497
           F  L +A    +T YS   K+L   P L   +T K P    EY    +D+KKW N
Sbjct: 332 FWSLRKAFARKKTDYSSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLDTKKWNN 386


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 501 PRSSTSWSPPAGGSTPSWGPCR 436
           P SSTS SPPA G+  +  P +
Sbjct: 521 PSSSTSSSPPAKGAAAAGQPSK 542


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/28 (17%), Positives = 17/28 (60%)
 Frame = -2

Query: 168 LQQRQWLEYLRWPVVKDSSIDVPILQQI 85
           +Q+ +W +   W  ++  +++ PI+ ++
Sbjct: 620 IQKHKWFDGFNWEGLRARTLEPPIMPRV 647


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 109 NAAVLYDRPPKIFKPL 156
           NAA+ YDR   I +PL
Sbjct: 138 NAAIAYDRYSTIARPL 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,523
Number of Sequences: 438
Number of extensions: 3889
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)