Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1461
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16570.1 68414.m01986 glycosyl transferase family 1 protein c...    81   8e-16
At2g24540.1 68415.m02931 kelch repeat-containing F-box family pr...    29   2.0  
At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putati...    28   4.5  
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein...    27   7.9  
At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 famil...    27   7.9  

>At1g16570.1 68414.m01986 glycosyl transferase family 1 protein
           contains similarity to mannosyltransferase GI:1800223
           from Dictyostelium discoideum; contains Pfam glycosyl
           transferase, group 1 family protein domain PF00534
          Length = 465

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = +2

Query: 506 RTPWLDASDYPRMVASADLGVCLHTSSSGLDLPMKVVDMFGAGL 637
           RT WL A DYP ++ SADLGVCLHTSSSGLDLPMKVVDMFG GL
Sbjct: 337 RTMWLAAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL 380



 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 27/67 (40%), Positives = 46/67 (68%)
 Frame = +1

Query: 1   LVRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINAAVLYDRPPKIFKPLTLLEKHDW 180
           LV + R +E  +G+ +  +LCVT AM+ +L QNW + A VLYD+PP+ F+P  L E+H+ 
Sbjct: 151 LVSLYRWSENHYGKMATGSLCVTKAMQHELDQNWGVRAKVLYDQPPEFFRPALLEERHEL 210

Query: 181 YVKMAQN 201
           + ++ ++
Sbjct: 211 FCRVRKD 217



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
 Frame = +3

Query: 180 VRQDGSELPHVWSIQTRETE*S-FRETAFTEYVDGVLKPRPDRPGIIFSSTSWTPDEDFT 356
           VR+D      V+   +RE E     ET FT   +  +  + +RP ++ SSTSWTPDE+F 
Sbjct: 214 VRKDLCHPIGVYDFISRELENQELNETLFTTKFNADISLKQNRPALVVSSTSWTPDENFG 273

Query: 357 LLMEALQVYE----------TTYSLTKV---LPRLICVITGKGPMREYYRQLVDSKKWKN 497
           +L+EA  +Y+           T  +++     P L+ +ITGKGP +E Y + +     ++
Sbjct: 274 ILLEAAVMYDRRVAARSKGSETAEISEEQHHYPNLLFIITGKGPEKEMYEEKIKRLNLRH 333

Query: 498 V 500
           V
Sbjct: 334 V 334


>At2g24540.1 68415.m02931 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 4
           [Arabidopsis thaliana] GI:10716953; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 372

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 627 PNMSTTFIGRSRPEELVCRHTPRSALATILG*SDASSQGVRHPRSSTSWS 478
           P M  +F   S P  L C   PR     +LG  D +   V +   +  WS
Sbjct: 110 PPMPNSFTKISSPHALSCASMPRQGKLFVLGGGDVNRSAVVYTALTNRWS 159


>At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putative
           / proton pump 10, putative / proton-exporting ATPase,
           putative strong similarity to SP|Q43128 ATPase 10,
           plasma membrane-type (EC 3.6.3.6) (Proton pump 10)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR001757: ATPase, E1-E2 type; contains Pfam profile
           PF00690: Cation transporter/ATPase, N-terminus
          Length = 947

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 545 PFLGSRTRRARVYDIHVLPLLGVHQLAVVLPHGALAGDHADQTRKNFG 402
           P L   T   +  D+ +LPL  V +     P G L+GD A++  K FG
Sbjct: 8   PLLDPDTFNRKGIDLGILPLEEVFEYLRTSPQGLLSGD-AEERLKIFG 54


>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
           low similarity to SP|P25583 Karyogamy protein KAR4
           {Saccharomyces cerevisiae},
           (N6-adenosine)-methyltransferase [Mus musculus]
           GI:10179948; contains Pfam profile PF05063: MT-A70
           (S-adenosylmethionine-binding subunit of human mRNA:m6A
           methyl-transferase (MTase))
          Length = 775

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 531 SDASSQGVRHPRSSTSWSPPAGGSTPSWGPCR 436
           S    +G+   ++S  W PP GG  P   P R
Sbjct: 533 SGQMGRGMPSDKTSGGWVPPRGGGPPGKAPSR 564


>At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 family
           protein contains Pfam PF05179: RNA pol II accessory
           factor, Cdc73 family
          Length = 415

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 252 LESFIRFLVFGCSKHGVVLSHL---DVPVVLLQQRQ-WLEYLRWPVVKDSSIDVPILQQ 88
           LE+ + ++     KHG  +       VP V L  R+  L+YL   V    SID  +LQQ
Sbjct: 52  LEALVHYVKNQQLKHGEYMQSTVKNSVPAVTLPDRKPLLDYLTGRVASSDSIDFLLLQQ 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,332,114
Number of Sequences: 28952
Number of extensions: 326419
Number of successful extensions: 1062
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)