Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1460
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.00
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.3
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 4.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 4.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.0
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 25 7.0
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 28.3 bits (60), Expect = 1.00
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 436 VVEISLQHIFYLRSFVLVMMSYIHIMTSSRYVKTLFSPRFTESINLR*VLGAVIFLA 266
+ ISL + F+ SF+ V +H+MTS K L S + SI L + ++L+
Sbjct: 21 ISSISLSNSFFPHSFMFVKS--LHLMTSQHIFKCLSSCNYALSILHNICLASFLYLS 75
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 400 EDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLI 498
++ I V ++ PK +KE++ FL + Y RK I
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 592 TCLHFSKAYMYPSVNTSLLFFFKYFVSFQNLESTFCSKLLNLRMILFLSGF*VVEI--SL 419
TCLHFSK ++P+ L+ F + ++ Q L+ + + I + + V EI L
Sbjct: 117 TCLHFSK-IIFPAQKVICLYIFLFALN-QTLQECIEEYVFSSECIKYRQFYSVYEIIDFL 174
Query: 418 QHIFYLRSFVL 386
+ FY R FV+
Sbjct: 175 RTNFY-RLFVI 184
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 592 TCLHFSKAYMYPSVNTSLLFFFKYFVSFQNLESTFCSKLLNLRMILFLSGF*VVEI--SL 419
TCLHFSK ++P+ L+ F + ++ Q L+ + + I + + V EI L
Sbjct: 117 TCLHFSK-IIFPAQKVICLYIFLFALN-QTLQECIEEYVFSSECIKYRQFYSVYEIIDFL 174
Query: 418 QHIFYLRSFVL 386
+ FY R FV+
Sbjct: 175 RTNFY-RLFVI 184
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 592 TCLHFSKAYMYPSVNTSLLFFFKYFVSFQNLESTFCSKLLNLRMILFLSGF*VVEI--SL 419
TCLHFSK ++P+ L+ F + ++ Q L+ + + I + + V EI L
Sbjct: 89 TCLHFSK-IIFPAQKVICLYIFLFALN-QTLQECIEEYVFSSECIKYRQFYSVYEIIDFL 146
Query: 418 QHIFYLRSFVL 386
+ FY R FV+
Sbjct: 147 RTNFY-RLFVI 156
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 592 TCLHFSKAYMYPSVNTSLLFFFKYFVSFQNLESTFCSKLLNLRMILFLSGF*VVEI--SL 419
TCLHFSK ++P+ L+ F + ++ Q L+ + + I + + V EI L
Sbjct: 117 TCLHFSK-IIFPAQKVICLYIFLFALN-QTLQECIEEYVFSSECIKYRQFYSVYEIIDFL 174
Query: 418 QHIFYLRSFVL 386
+ FY R FV+
Sbjct: 175 RTNFY-RLFVI 184
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 205 Y*SQFGSDSLSSGQIFIEVRR-LTIFLSISKFFYY 104
Y +F + S++ ++F+ + +T FLSI FFYY
Sbjct: 247 YGLEFVTKSIAPWKLFMIITGGITFFLSIFLFFYY 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,290
Number of Sequences: 5004
Number of extensions: 48086
Number of successful extensions: 143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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