Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1460
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0147 - 1166439-1166460,1166525-1167537 42 6e-04
05_03_0317 - 12249228-12249275,12263876-12264518,12264954-122666... 42 6e-04
10_02_0059 + 4785858-4786988 35 0.063
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 35 0.063
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 35 0.063
03_02_1029 - 13488535-13493037 35 0.063
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 34 0.083
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 34 0.083
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 34 0.11
09_02_0555 - 10588685-10592038 33 0.15
10_04_0010 - 7487455-7489490,7489569-7489980 33 0.25
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 32 0.45
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 32 0.45
08_01_0775 - 7531397-7531564,7531590-7532771 32 0.45
04_01_0187 - 2153546-2154520,2154581-2155858 32 0.45
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 29 2.4
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 29 2.4
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 29 4.1
>08_01_0147 - 1166439-1166460,1166525-1167537
Length = 344
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 364 YVYTTSLQERTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
YV T E ++ K+ A++ +P PKT +++SFL L +YR+ +QDF
Sbjct: 80 YVVTPQGIE-VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDF 126
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 282 APSTYLRLMDSVKRGL--NNVLTYLDDVII 365
APST++RLM+ V R V+ Y DD++I
Sbjct: 8 APSTFMRLMNEVLRPFIGKFVVVYFDDILI 37
>05_03_0317 -
12249228-12249275,12263876-12264518,12264954-12266682,
12283603-12283975,12284119-12284715
Length = 1129
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 364 YVYTTSLQERTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
YV T E ++ K+ A++ +P PKT +++SFL L +YR+ +QDF
Sbjct: 586 YVVTPQGIE-VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDF 632
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 282 APSTYLRLMDSVKRGL--NNVLTYLDDVII 365
APST++RLM+ V R V+ Y DD++I
Sbjct: 514 APSTFMRLMNEVLRPFIGKFVVVYFDDILI 543
>10_02_0059 + 4785858-4786988
Length = 376
Score = 34.7 bits (76), Expect = 0.063
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 403 DKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ + AV + PKT +I+SFL L YYR+ I++F
Sbjct: 206 ETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENF 240
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 34.7 bits (76), Expect = 0.063
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 403 DKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ + AV + PKT +I+SFL L YYR+ I++F
Sbjct: 263 ETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENF 297
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 34.7 bits (76), Expect = 0.063
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+V K+ PKT +I+SFL L YYR+ I++F
Sbjct: 627 SVTKWTPPKTVSQIRSFLGLAGYYRRFIENF 657
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 34.7 bits (76), Expect = 0.063
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 403 DKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ + AV + PKT +I+SFL L YYR+ I++F
Sbjct: 776 ETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENF 810
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+V + PKT EI+SFL L YYR+ I++F
Sbjct: 439 SVTNWKQPKTVSEIRSFLGLAGYYRRFIENF 469
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+V + PKT EI+SFL L YYR+ I++F
Sbjct: 971 SVTNWKQPKTVSEIRSFLGLAGYYRRFIENF 1001
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+V + PKT EI+SFL L YYR+ I++F
Sbjct: 1057 SVLSWKQPKTVSEIRSFLGLAGYYRRFIENF 1087
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
AV + PKT +I+SFL L YYR+ I++F
Sbjct: 397 AVTDWKQPKTVTQIRSFLGLAGYYRRFIENF 427
>10_04_0010 - 7487455-7489490,7489569-7489980
Length = 815
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 406 KICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
K+ AV + PKT +I+SFL L YY + I++F
Sbjct: 137 KLTAVTDWKQPKTVTQIRSFLGLAGYYWRFIENF 170
>10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+V + PK EI+SFL L YYR+ I++F
Sbjct: 940 SVTNWKQPKIVSEIRSFLGLAGYYRRFIENF 970
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 403 DKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ + AV PK+ +++SFL L YYR+ I++F
Sbjct: 487 ETVTAVTDLKQPKSVTQVRSFLGLAGYYRRFIKNF 521
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 409 ICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ AV + PKT +++ FL L YYR+ I++F
Sbjct: 74 VTAVTDWKQPKTVTQVRRFLGLAGYYRRFIENF 106
>04_01_0187 - 2153546-2154520,2154581-2155858
Length = 750
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+V + PKT EI+SFL YYR+ I +F
Sbjct: 96 SVTNWKQPKTVSEIRSFLGFTGYYRRFIDNF 126
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 379 SLQERTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDFENSQNT 525
S +TN D IC V K P+P T+ K + +Y+ I + +S+NT
Sbjct: 323 SASHQTNGDVICPVCKDPIP-TRARAKQLPCMHLYHSSCILPWLSSRNT 370
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 415 AVKKFPLPKTQKEIKSFLDLIVYYRKLIQDFEN 513
+V + PKT EI+SFL L YYR Q+ +N
Sbjct: 750 SVTNWKQPKTVSEIRSFLGLAGYYRS-FQELKN 781
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 379 SLQERTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDFENSQNT 525
S + N+D IC V K P+P T+ K + +Y+ I + +S+NT
Sbjct: 865 STSHQINDDVICPVCKDPIP-TRARAKQLPCMHLYHSSCILPWFSSRNT 912
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,635,388
Number of Sequences: 37544
Number of extensions: 231018
Number of successful extensions: 475
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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