Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1460
(642 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 52 9e-07
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 52 9e-07
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 47 2e-05
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 46 3e-05
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 46 3e-05
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 45 8e-05
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 45 8e-05
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 45 1e-04
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 43 4e-04
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 43 4e-04
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 40 0.003
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 39 0.005
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 39 0.005
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 38 0.012
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 37 0.027
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 37 0.027
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 37 0.027
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 37 0.027
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 37 0.027
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 37 0.027
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 36 0.047
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 34 0.19
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 33 0.43
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 30 2.3
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 29 7.1
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 51.6 bits (118), Expect = 9e-07
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
R N +KI A+K FP P ++K IKSFL L+ YYRK I+DF
Sbjct: 416 RPNPNKIEAIKNFPCPHSKKSIKSFLGLLGYYRKFIRDF 454
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 605 PVLQYPDFEKPF 640
P+LQYPDF KPF
Sbjct: 493 PILQYPDFTKPF 504
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 51.6 bits (118), Expect = 9e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ N +KI A+KKFP P ++ IKSFL L+ YYRK I+DF
Sbjct: 530 KPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIRDF 568
Score = 32.7 bits (71), Expect = 0.43
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 282 APSTYLRLMDSVKRGLNNV--LTYLDDVII 365
AP+T+ R+MDSV LN L YLDD+II
Sbjct: 450 APATFQRVMDSVLGDLNGTICLFYLDDIII 479
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 518 KILEEKQQTSVDRWIHISLRKM*TGIN*CPVLQYPDFEKPF 640
K L+ K+Q + D+ + + T ++ P+L +PDFEKPF
Sbjct: 577 KQLKGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPF 617
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ N +K A+ FPLPKT K+IKSFL L +YRK I +F
Sbjct: 494 KPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNF 532
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ N +KI A++K+P+P KEIK+FL L YYRK I +F
Sbjct: 421 KPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNF 459
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ N KI AV FP+PK+ KEIKSFL L +YRK I +F
Sbjct: 409 KPNPAKIKAVVNFPIPKSTKEIKSFLGLCGFYRKFIPNF 447
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 45.2 bits (102), Expect = 8e-05
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDFEN 513
+ N +KI A++ +PLP KEIK+FL + YYRK I +F +
Sbjct: 383 KPNPEKIKAIQDYPLPSKPKEIKAFLGITGYYRKFIPNFSD 423
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 282 APSTYLRLMDSVKRGL--NNVLTYLDDVII 365
AP+T+ R M+++ R L N L YLDD+I+
Sbjct: 303 APATFQRCMNNLLRPLLNKNCLVYLDDIIV 332
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 45.2 bits (102), Expect = 8e-05
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = +1
Query: 337 F*RISMTSLYVYTTSLQERTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
F + S++ L T+ T+ +K+ A+K+FP PK E++SFL L YYR I+DF
Sbjct: 355 FFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDF 411
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 44.8 bits (101), Expect = 1e-04
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
R N +K+ A++ +PLP KEIKSFL L +YRK I F
Sbjct: 368 RPNPEKLRAIENYPLPTKPKEIKSFLGLTGFYRKFIPHF 406
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 42.7 bits (96), Expect = 4e-04
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 394 TNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
T+ K+ A+ FP+P+T KE++SFL L YYR+ I ++
Sbjct: 410 TSPTKVQAISDFPIPRTLKELRSFLGLSGYYRRFIPNY 447
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 42.7 bits (96), Expect = 4e-04
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 394 TNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
T+ K+ A+ FP+P+T KE++SFL L YYR+ I ++
Sbjct: 254 TSPTKVQAISDFPIPRTLKELRSFLGLSGYYRRFIPNY 291
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 39.9 bits (89), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ + K+ A+ + P P + KE+K FL + YYRK IQD+
Sbjct: 337 KADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDY 375
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 39.1 bits (87), Expect = 0.005
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 397 NEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
N+ I A+K FP+P ++SFL L Y+R+ I+DF
Sbjct: 928 NDKGIEAIKNFPIPNNVHTVQSFLGLCSYFRRFIKDF 964
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 39.1 bits (87), Expect = 0.005
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ N K+ A+ +P+P KEI++FL L YYRK I ++
Sbjct: 420 KPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNY 458
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 37.9 bits (84), Expect = 0.012
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+ ++ KI A+ K LP QK+IKSFL + Y R+ I+D+
Sbjct: 346 KPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDY 384
Score = 28.3 bits (60), Expect = 9.4
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +3
Query: 387 RTNERR*NMCCKEISTT*NPERNKIILRFNSLLQKVDSRF*K----LTKYLKKNSRLVLT 554
+ ++++ + CK I+ N ++ K L L++ + K L KYLKKNS++
Sbjct: 346 KPSQKKIDAICK-INLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKKNSKINTH 404
Query: 555 D-GYI*AFEKCKQVLINA 605
D Y+ AF+K K +LI +
Sbjct: 405 DQXYVEAFQKLK-ILITS 421
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 36.7 bits (81), Expect = 0.027
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+++ +K+ A++++P P +++SFL L YYR I+DF
Sbjct: 376 KSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 414
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 36.7 bits (81), Expect = 0.027
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+++ +K+ A++++P P +++SFL L YYR I+DF
Sbjct: 371 KSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 409
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 36.7 bits (81), Expect = 0.027
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+++ +K+ A++++P P +++SFL L YYR I+DF
Sbjct: 406 KSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 444
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 36.7 bits (81), Expect = 0.027
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+++ +K+ A++++P P +++SFL L YYR I+DF
Sbjct: 371 KSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 409
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 36.7 bits (81), Expect = 0.027
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+++ +K+ A++++P P +++SFL L YYR I+DF
Sbjct: 371 KSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 409
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 36.7 bits (81), Expect = 0.027
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
+++ +K+ A++++P P +++SFL L YYR I+DF
Sbjct: 824 KSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 862
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 35.9 bits (79), Expect = 0.047
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 394 TNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
++ +K+ A++++P P +++SFL L YYR I+DF
Sbjct: 407 SDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 444
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 33.9 bits (74), Expect = 0.19
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 394 TNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
T+ K+ A++K+ P ++SFL L YYR I+DF
Sbjct: 403 TSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCFIKDF 440
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 32.7 bits (71), Expect = 0.43
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 391 RTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
R N KI ++ P P+T ++ F+ L Y+RK + F
Sbjct: 655 RPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVSGF 693
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 397 NEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
++ K A++++P+P + F+ YYR+ IQ+F
Sbjct: 425 DDTKYDAIQRYPVPTDADSARRFVAFCNYYRRFIQNF 461
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 397 NEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDFEN 513
++ K ++K+P+P + F+ YYR+ I++F +
Sbjct: 286 DDTKYEVIEKYPIPTDADSARRFVAFCNYYRRFIKNFSD 324
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,850,724
Number of Sequences: 53049
Number of extensions: 421749
Number of successful extensions: 874
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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