Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1460
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    38   0.006
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    38   0.006
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    38   0.006
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm rece...    28   4.9  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 394  TNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
            T E K   +K+F  P   KE++SFL L+ YYRK I +F
Sbjct: 1238 TQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNF 1275


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 394  TNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
            T E K   +K+F  P   KE++SFL L+ YYRK I +F
Sbjct: 1141 TQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNF 1178


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 394  TNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDF 507
            T E K   +K+F  P   KE++SFL L+ YYRK I +F
Sbjct: 1152 TQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNF 1189


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = -3

Query: 556 SVNTSL-LFFFKYFVSFQNLESTFCSKLLNLRMILFLSGF*VVEISLQHIFYLRSFVLVM 380
           SV  S+ +F F  FV F  L  T+  K L    ILF +     +   QH   +  F  V 
Sbjct: 142 SVRISIAVFIFVMFVDFTELAMTYRIKWLP--SILFYNNS-KSKPEWQHYVLVDCFSCVT 198

Query: 379 MSYIHIMTSSRYVKTLFSPRFTESINLR 296
              IHI   SR+V +L  P  T  + L+
Sbjct: 199 SLQIHISICSRFVPSLIYPILTTILILQ 226


>AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical
           protein C49D10.8 protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 427 ISLQHIFYLRSFVLVMMSYIHIMTSSRYVKTLFSPRFTESINLR*VLGAVIFLA 266
           ISL   FY++ F  ++  Y+ ++  S      F P  T   N +  +GA++F++
Sbjct: 64  ISLVSTFYVKRFKRILPLYLLVILLSMVALYNFFPETTVESNKKSAMGALLFVS 117


>AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 40 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/92 (25%), Positives = 38/92 (41%)
 Frame = -3

Query: 550 NTSLLFFFKYFVSFQNLESTFCSKLLNLRMILFLSGF*VVEISLQHIFYLRSFVLVMMSY 371
           N + L    +F+S Q     FC+  ++L+M   L  F V    LQ  F+    V +++  
Sbjct: 198 NATFLLCLSFFISCQYSIIIFCAVQMHLQMNKELLKFSVANQKLQRQFFKALLVQILVPA 257

Query: 370 IHIMTSSRYVKTLFSPRFTESINLR*VLGAVI 275
           I  +  S  +  L +P F   I     L   +
Sbjct: 258 ILFVLPS--LPFLITPFFNIEIGFNPALNCAL 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,456
Number of Sequences: 27780
Number of extensions: 247197
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)