Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1460
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31875.1 68417.m04529 expressed protein                             29   2.6  
At5g43030.1 68418.m05250 DC1 domain-containing protein contains ...    27   8.0  

>At4g31875.1 68417.m04529 expressed protein
          Length = 138

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 388 ERTNEDKICAVKKFPLPKTQKEIKSFLDLIVYYRKLIQDFE 510
           E T+E   C ++K+ L +T     S +D  V YR+LI DF+
Sbjct: 2   EETSESLACRLEKYKLIET-----STIDTAVSYRRLILDFD 37


>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 564

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -3

Query: 625 IWIL*DRALINTCLHFSKAYMYPSVNTSLLFFFKYFVSFQNLESTFCSKLLNLRMILFLS 446
           I  L D  L  TC + SK   +PS +  L  + +Y+V+    +  F   + N R     S
Sbjct: 288 ICTLCDFVLHETCANLSKKKRHPSESRRLTLYDEYYVNSLMRKGPFICFVCNQR----CS 343

Query: 445 GF*VVEIS 422
           GF  VE S
Sbjct: 344 GFAYVEDS 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,856
Number of Sequences: 28952
Number of extensions: 219108
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)