Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1459
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   6.7  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   8.8  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   8.8  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.8  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 454 LPTRDRQQIPSRPGRRP 504
           LP+R    +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 591 PNLVSPSTSPVVRKATPSGFR 529
           PN +SPST P++  +  S FR
Sbjct: 253 PNRLSPSTQPLLSNSRHSSFR 273


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 458 RPETANRSHHAQAGDPAMNQGCGWRNPDGVA-FRTTGDVD 574
           RP   N+   AQ G P+ + G   R+   V+ F TT D++
Sbjct: 72  RPNLLNKFMSAQDGTPSKSTGFNERSSQLVSEFTTTEDIE 111


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 123 RLSRGGVRAEHGHRGSGVDH*SDLHI 200
           R  RG + +EHG R S +D   D HI
Sbjct: 144 RDGRGELGSEHGERRSAMDGLRDRHI 169


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 334 HSPSWPSEVWHERSSFVETP 275
           HS ++P+E+W  R    E P
Sbjct: 45  HSLTFPTEIWETRDGLFEEP 64


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 337 STITCATRPITP*SLTEPTSSI*ESAVARVHRTST 441
           +T TC++RP    S    TS++ ES  +    TST
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,502
Number of Sequences: 5004
Number of extensions: 43270
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)