Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1459
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0498 + 3734498-3734976,3736176-3736800                           30   1.7  
11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871     28   5.2  
11_01_0803 - 7136331-7136347,7136596-7136731                           28   6.9  
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537...    27   9.1  

>07_01_0498 + 3734498-3734976,3736176-3736800
          Length = 367

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 395 DVGSVSDYGVIGRVAQVIVDALPFLAVGGLARKV 294
           D    +D GV+  +A  +VD   FLA GG+ R V
Sbjct: 26  DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59


>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
          Length = 148

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 490 PGRRPCHEPGLRLAEP 537
           P R PCH P LR+A P
Sbjct: 118 PTRSPCHRPPLRMASP 133


>11_01_0803 - 7136331-7136347,7136596-7136731
          Length = 50

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 329 PFLAVGGLARKVLVRRDARHQGRW 258
           P  A GG A K L RRD   +GRW
Sbjct: 18  PSPAGGGAAAKGLERRDRERRGRW 41


>02_05_0356 +
           28252154-28252897,28253171-28253377,28253473-28253710,
           28254853-28255220
          Length = 518

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 392 VGSVSDYGVIGRVAQVIVDALPFLAVGGLARKVLVRRDARHQGRW-SLSATLGCVTG 225
           VG+ S + V+ +V  +    L  LA+     K   +   RH  RW S + T G + G
Sbjct: 306 VGNSSPFAVLPKVTPITTFLLVILAMSPCLMKAFSKPQPRHIIRWVSYATTCGFMFG 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,377,119
Number of Sequences: 37544
Number of extensions: 375681
Number of successful extensions: 1240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)