Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1459
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical...    29   2.7  
Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical
           protein Y17G7B.19 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 351 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRP 470
           C +  ++I + G    ++ +  GPCS++ID C   PD+ P
Sbjct: 101 CYSKKSSICSTGGTPFEVELSDGPCSNHID-C--NPDELP 137


>Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical
           protein C14A6.1 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 112 LLLIGFLAAACAQNMDTGDL-ESIINQIFTSAKPPTQ 219
           LLL G L AA AQN +TG +  S  N+ +     P Q
Sbjct: 6   LLLFGLLGAATAQNCNTGGIYNSQFNRCYQYFTAPAQ 42


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 409 SAVARVHRTSTSAVWLPTRDRQQIPSRPGRRP 504
           SA + V R  T A  + +  R + PSRPG RP
Sbjct: 389 SASSSVPRVPTGAASMTSSSRIRPPSRPGSRP 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,446,581
Number of Sequences: 27780
Number of extensions: 271057
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)