Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1459
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa...    30   1.1  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    27   7.6  

>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana];  contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 529

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 185 LMIDSRSPVSMFCA--HAAARKPMSRSLYIFGYYSQNITLTISNSQCSS*SNR 33
           L+++   P + + A    A  KP   S+Y    YS + T T S+S C S  +R
Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 491 GRDGICWRSLVGSQTADVDVR*TRATADSYID 396
           G DG+ WR+L+G+ +A  D++  +  A   I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 609 TIQGNSPNLVSPSTSPVVRKATPSGFRQPQPWFMAGSPA 493
           T + N+PN  SPS SP   K TP     P     A SP+
Sbjct: 48  TPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLPARSPS 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,565
Number of Sequences: 28952
Number of extensions: 255917
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)