Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1457
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P11138 Cluster: Trans-activating transcriptional regula...   153   3e-36
UniRef50_P41716 Cluster: Trans-activating transcriptional regula...    50   6e-05
UniRef50_A0C9F0 Cluster: Chromosome undetermined scaffold_16, wh...    34   3.3  
UniRef50_Q5AH83 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_UPI00003AC7CC Cluster: UPI00003AC7CC related cluster; n...    33   5.8  
UniRef50_Q2BAU2 Cluster: Subtilisin-type proteinase; n=1; Bacill...    33   7.7  

>UniRef50_P11138 Cluster: Trans-activating transcriptional
           regulatory protein; n=11; Nucleopolyhedrovirus|Rep:
           Trans-activating transcriptional regulatory protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 582

 Score =  153 bits (372), Expect = 3e-36
 Identities = 75/90 (83%), Positives = 80/90 (88%)
 Frame = +3

Query: 3   DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECL 182
           DN YSEFCDKQ PNDYL+YYN+PTPDGADTV+SDSETAAASNFLASVNSLT DND++ECL
Sbjct: 22  DNSYSEFCDKQ-PNDYLSYYNHPTPDGADTVISDSETAAASNFLASVNSLT-DNDLVECL 79

Query: 183 LKTTDNLGEAVSSAYYSESLELPVRSNHRP 272
           LKTTDNL EAVSSAYYSESLE PV     P
Sbjct: 80  LKTTDNLEEAVSSAYYSESLEQPVVEQPSP 109



 Score =  142 bits (345), Expect = 5e-33
 Identities = 69/84 (82%), Positives = 71/84 (84%)
 Frame = +2

Query: 257 EQPSPSSAYNAESFEQSVGVNQPSATGTKRKLDEYLDDSQSVVGQFNXXXXXXXXXXSTI 436
           EQPSPSSAY+AESFE S GVNQPSATGTKRKLDEYLD+SQ VVGQFN          STI
Sbjct: 105 EQPSPSSAYHAESFEHSAGVNQPSATGTKRKLDEYLDNSQGVVGQFNKIKLRPKYKKSTI 164

Query: 437 QSCATLEQTINHNTNICTVASTQE 508
           QSCATLEQTINHNTNICTVASTQE
Sbjct: 165 QSCATLEQTINHNTNICTVASTQE 188



 Score = 96.3 bits (229), Expect = 5e-19
 Identities = 41/42 (97%), Positives = 41/42 (97%)
 Frame = +1

Query: 508 ITHYFTNDFAPYLMRFDDNDYNSNRFFDHMSETGYYMFVVKK 633
           ITHYFTNDFAPYLMRFDDNDYNSNRF DHMSETGYYMFVVKK
Sbjct: 189 ITHYFTNDFAPYLMRFDDNDYNSNRFSDHMSETGYYMFVVKK 230


>UniRef50_P41716 Cluster: Trans-activating transcriptional
           regulatory protein; n=11; Nucleopolyhedrovirus|Rep:
           Trans-activating transcriptional regulatory protein -
           Choristoneura fumiferana nuclear polyhedrosis virus
           (CfMNPV)
          Length = 560

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +1

Query: 505 RITHYFTNDFAPYLMRF-DDNDYNSNRFFDHMSETGYYMFVVKK 633
           +I  YF +DF+ YL +   D   ++NRF D++SETGYY+FVVKK
Sbjct: 169 QIAEYFKHDFSVYLEKQKSDCQMSANRFSDYISETGYYVFVVKK 212


>UniRef50_A0C9F0 Cluster: Chromosome undetermined scaffold_16, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_16, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1580

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 499  NSRITHYFTNDFAPYLMRFDDNDYNSNRFFDHMSETGYYMFVVKK 633
            NS +T +  ND  P +  F+ N YNS     H+S+  YY  ++ K
Sbjct: 1139 NSDLTEF--NDLNPLIFYFEFNSYNSLALAQHISQNYYYYNILSK 1181


>UniRef50_Q5AH83 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 273

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 24/85 (28%), Positives = 45/85 (52%)
 Frame = -1

Query: 340 SSSCRWLVHTNRLLKRFRIISRTGRWLLRTGSSRDSE**AELTASPRLSVVLSKHSIISL 161
           SS+C   +  +     + +IS + +  L + SSR S   +  ++SP +    SK SIIS+
Sbjct: 132 SSNCS--IQPSNSSSSYSLISSSSQEELSSSSSRPSS--SSPSSSPSVCDTKSKSSIISI 187

Query: 160 SSVNELTLAKKFEAAAVSLSDTTVS 86
           SS+++ + +   E  + S   T++S
Sbjct: 188 SSISDASSSISSEPLSSSYGSTSIS 212


>UniRef50_UPI00003AC7CC Cluster: UPI00003AC7CC related cluster; n=1;
           Gallus gallus|Rep: UPI00003AC7CC UniRef100 entry -
           Gallus gallus
          Length = 144

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +1

Query: 418 IQEKHNSKLCNP*ADN*SQHEHLHGCFNSRITHYFTNDFAPYLMRFDDNDYNSNRFF--- 588
           +  KHNSK C+      SQ  H H   +S + H   +  AP+  RF D    S   F   
Sbjct: 8   LNAKHNSKACS------SQESHQHALRSSCLNHPNAHPLAPHSQRFQDKSLFSASTFVTA 61

Query: 589 DHMSE 603
            H SE
Sbjct: 62  SHCSE 66


>UniRef50_Q2BAU2 Cluster: Subtilisin-type proteinase; n=1; Bacillus
           sp. NRRL B-14911|Rep: Subtilisin-type proteinase -
           Bacillus sp. NRRL B-14911
          Length = 447

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +3

Query: 6   NGYSEFCDKQQPNDYL--NYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMEC 179
           + Y  + D   P  Y+   Y+ N     + T ++    A  +  + SVN    + ++M  
Sbjct: 355 SNYGYYIDVTAPGVYIPSTYFKNQYAALSGTSMASPHVAGLAGLILSVNPDLSNREVMNI 414

Query: 180 LLKTTDNLGEAVSSAYYSESL 242
           +  T  ++GE    AY+   L
Sbjct: 415 IKGTARDIGEEGRDAYFGNGL 435


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,956,424
Number of Sequences: 1657284
Number of extensions: 11266936
Number of successful extensions: 33644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33622
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)