Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1457
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.75
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 29 0.75
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 1.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 3.0
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.3
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.0
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.2
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 9.2
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 9.2
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 9.2
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 28.7 bits (61), Expect = 0.75
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 6 NGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLL 185
N +E ++ ND N N PT + VV ++E +ASN +++ + D
Sbjct: 29 NSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDASTQSP 88
Query: 186 KTTDNL 203
+T++N+
Sbjct: 89 ETSENV 94
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 28.7 bits (61), Expect = 0.75
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 487 HGCFNSRITHYFTNDFAPYLMRFDDNDYNSNRFFDHMSETGYYM 618
HGC+ T Y DF P D D+NS D S T +Y+
Sbjct: 537 HGCYQIGTTQYTDLDFGPASEACRD-DWNSLDHLDPTSPTKHYI 579
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 433 NSKLCNP*ADN*SQHEHLHGCFNSRITHYFTNDFAP 540
N+ L A N ++ ++HGC+N T Y T D +P
Sbjct: 510 NNYLYGRQAMNSARAWYIHGCYNGSATSYPTVDLSP 545
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 475 HEHLHGCFNSRITHYFTNDFAPYLMRFDDND 567
H H+HG I Y+ DFAP L DD +
Sbjct: 752 HLHIHGR-TFPIKDYYIEDFAPKLNEDDDEE 781
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -2
Query: 132 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 13
K ++ S ++ C + +WDC + WA + LN
Sbjct: 71 KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +3
Query: 39 PNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVS 218
P + +NY N T + + +S+ + +NF + N + ND+ + + S
Sbjct: 221 PLNGVNYKQNTTNNRVSSF-QNSQYSTLNNFQNNSNQSPNSNDLQPLQAEAFHSAHNGYS 279
Query: 219 SAYYSESLELPVRSNH 266
S+ + + EL V +H
Sbjct: 280 SSTLNLNSELNVMKDH 295
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 57 YYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDND 167
YY+ TP+ TVVS + T+ S AS + + + D
Sbjct: 568 YYHVKTPEKGTTVVSRTVTSPKSGAYASPSKASYNQD 604
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 205 PRLSVVLSKHSIISLSSVNELTLAKKFEAAAVSLSDTTV 89
P ++L KH I L+SVN+ + K + +D +
Sbjct: 67 PSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNI 105
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 69 PTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSES 239
P+P + +ET S F A ++ L + + + LLK +NL + S + S S
Sbjct: 336 PSPFFHIPYIPKTETLNDSQFAAGLSLLASELESQKNLLKKFENLKKKSSKDFLSPS 392
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 27 DKQQPNDYLNYYNNPTPDGADTVVSD 104
D QPN YL Y NP D + D
Sbjct: 503 DLPQPNIYLTRYTNPPKSLLDNCILD 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,842
Number of Sequences: 5004
Number of extensions: 49206
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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