Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1457
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348...    28   5.4  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    28   5.4  
03_06_0551 - 34677620-34678225                                         27   9.5  

>12_01_0441 +
           3484003-3484374,3485071-3485151,3485242-3485514,
           3485695-3485826,3485903-3486076,3486164-3486393,
           3486562-3486679,3486717-3486743,3486948-3487079,
           3487189-3487323,3487393-3487599,3487772-3487936
          Length = 681

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 321 NHRQLELNGSWTNTWTIHKVWW 386
           N R   +NGSW   W + K+ W
Sbjct: 361 NRRLAAVNGSWLGAWGLEKLLW 382


>04_03_0998 -
           21555696-21556080,21556177-21556254,21556333-21556424,
           21556524-21556620,21557113-21557141,21557620-21557781,
           21557981-21558061,21558156-21558314,21558394-21558510,
           21558598-21558666,21558753-21558831,21560884-21561050,
           21561109-21561229,21561522-21561649,21562293-21562361,
           21562408-21562539,21562619-21562991,21563274-21563398,
           21563500-21563655,21563785-21564198,21564634-21564691,
           21566522-21566648,21568047-21568305,21569005-21569104,
           21569231-21569317,21569454-21569692,21569914-21569999,
           21570409-21570532,21571111-21574332
          Length = 2444

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 75  PDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPV 254
           P G  +VVS+ +T   +N     N   DD  + E  L  TD +     +  +  +++  +
Sbjct: 553 PSGPSSVVSEKDTGLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGALSFLPTMDTVL 612

Query: 255 RSN 263
             N
Sbjct: 613 EGN 615


>03_06_0551 - 34677620-34678225
          Length = 201

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 84  ADTVVSDSET--AAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPVR 257
           A+  V  + T  AAA  F  +   +  D D+ +CL +   ++ EAVS    +E   + + 
Sbjct: 59  AENAVRSAATIGAAAGTFARAELDIVKDTDMWQCLDECAQDIEEAVSHLDDTEGGVVDLD 118

Query: 258 SNHRPVLLIM 287
           +  + V L M
Sbjct: 119 AKFKDVRLFM 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,663
Number of Sequences: 37544
Number of extensions: 314096
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)