Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1457
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 31 1.0
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32) 29 4.2
SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 29 4.2
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06) 28 5.6
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.4
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14) 27 9.7
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +3
Query: 3 DNGYSEFCDKQQPNDYLNYYNNPTPDGADT----VVSDSETAAASNFLASVNSLTDDNDI 170
DN + D N+ +Y N+PT D T SD++T + N S N DND
Sbjct: 116 DNDTTSDNDTTSDNNTTSY-NDPTSDNDTTSDNDTTSDNDTTS-DNETTSDNDTNSDNDT 173
Query: 171 MECLLKTTDN 200
KTTDN
Sbjct: 174 TSDNDKTTDN 183
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +3
Query: 3 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECL 182
DN + D ND + N+ T D T SD++T A +N S N+ T DND
Sbjct: 20 DNNTTSDNDTTSDNDTTSD-NDTTADNNTT--SDNDTTADNN-TTSDNNTTSDNDTTSDN 75
Query: 183 LKTTDN 200
T+DN
Sbjct: 76 DTTSDN 81
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 87 RLHPAWDCYNNSNSRWAVVYHKTL 16
RLH W C ++ S A++YH TL
Sbjct: 800 RLHHTWSCLHHQYSSSAIMYHSTL 823
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 75 AWDCYNNSNSRWAVVYHKTLNSRCR 1
AW YN + ++W VVY KT + R
Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKER 1231
>SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)
Length = 1052
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 511 THYFTNDFAPYLMRFDDNDYNSNRFFDHMSETGYYMFVVKKK 636
T+ NDF YL + + F DH + TGYY FV K
Sbjct: 197 TNEIGNDFDWYLGIGETFSRFTGPFADHTTGTGYYAFVESSK 238
>SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 220 ELTASPRLSVVLSKHSIISLSSVNELTLAKKFEAAAVSLSDTTVS 86
E+T SPR + ++ I++S V ++T++ +F+ TV+
Sbjct: 550 EITVSPRFQITVAPRFQITVSPVYQITVSPRFQITVTPRFQITVT 594
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 220 ELTASPRLSVVLSKHSIISLSSVNELTLAKKFEAAAVSLSDTTVS 86
E+T SPR + ++ I++S V ++T++ +F+ TV+
Sbjct: 752 EITVSPRFQITVAPRFQITVSPVYQITVSPRFQITVTPRFQITVT 796
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +3
Query: 87 DTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPVRSNH 266
+ ++++ +T++ + +N+LTD+N+ ++ LKTTD G ESL + + +
Sbjct: 597 ENLLTEGKTSS-QKLQSKINTLTDENNSLKVRLKTTD--GTIERQIQQVESLTVQLAESE 653
Query: 267 R 269
R
Sbjct: 654 R 654
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 3 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 170
DN ++ D ND +N N+ D D ++D N + N + DDND+
Sbjct: 52 DNDMNDDNDMNDDND-MNDDNDMNDDNDDNDMNDDNDMNDDNDMNDDNDMNDDNDM 106
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +3
Query: 48 YLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAY 227
Y+ N+P P A+ + +T A L + D+ + M CLL D L VS A
Sbjct: 1681 YMGDGNSPLPSAAEVLACTPDTTAEEVELFWWRAFGDNQEQMFCLL-NADLLPYNVSQAA 1739
Query: 228 YSESLELPVRSNHRPVLLIM 287
ESL + + HR L ++
Sbjct: 1740 V-ESLSHMLENLHREDLKLV 1758
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 266 SPSSAYNAESFEQSVGVNQPSATGTKRKLDEYLDDSQSVVGQ 391
+PSS + Q+ VNQP+ TGT +++ D G+
Sbjct: 1165 NPSSLHGFSRVIQACSVNQPTHTGTSKQVSSSTGDRDESEGK 1206
>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
Length = 624
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 343 FSSSCRWLVHTNRLLKRFRIISRTG 269
F S RWL+ NRL + +++SR G
Sbjct: 190 FPESARWLIANNRLDEALQVLSRYG 214
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 3 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 125
DNG C ++ D + + PTP G V SD AAS
Sbjct: 581 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 617
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 3 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 125
DNG C ++ D + + PTP G V SD AAS
Sbjct: 218 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 254
>SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)
Length = 248
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 24 CDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVN 146
C+ + PND + P D D S + + AA NFL N
Sbjct: 149 CNVRSPNDQIRPIKIPDTDPQDLPPSTNFSMAAGNFLEVYN 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,935
Number of Sequences: 59808
Number of extensions: 373694
Number of successful extensions: 994
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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