Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1457
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical pr... 30 1.2
U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical p... 28 4.9
U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical pr... 28 4.9
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z82287-1|CAB05316.1| 366|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical ... 28 6.5
Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical
protein F40D4.12 protein.
Length = 733
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 424 EKHNSKLCNP*ADN*SQHEHLHGCFNSR 507
+K NSKL + DN +Q LH CFNSR
Sbjct: 125 KKINSKLVSLAVDNINQVRELHVCFNSR 152
>U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical
protein F45E4.7b protein.
Length = 505
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 616 CNNQSRTYGRRTC 578
CNN SR Y RRTC
Sbjct: 492 CNNSSRLYNRRTC 504
>U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical
protein F45E4.7c protein.
Length = 784
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 616 CNNQSRTYGRRTC 578
CNN SR Y RRTC
Sbjct: 771 CNNSSRLYNRRTC 783
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 616 CNNQSRTYGRRTC 578
CNN SR Y RRTC
Sbjct: 855 CNNSSRLYNRRTC 867
>Z82287-1|CAB05316.1| 366|Caenorhabditis elegans Hypothetical
protein ZK550.1 protein.
Length = 366
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 484 LHGCFNSRITHYFTNDFAPYLM 549
L+ C+ + I H+F N F YL+
Sbjct: 76 LYFCYGNEIAHFFINGFGSYLL 97
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 78 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLELP 251
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 252 VRSNHRPV 275
V P+
Sbjct: 820 VAMADEPL 827
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 78 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLELP 251
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 252 VRSNHRPV 275
V P+
Sbjct: 820 VAMADEPL 827
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 78 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLELP 251
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 252 VRSNHRPV 275
V P+
Sbjct: 820 VAMADEPL 827
>AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical
protein Y97E10AR.4 protein.
Length = 547
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +3
Query: 12 YSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKT 191
YSE D + + ++ ++ + D T + S ASVN +DND+ L+
Sbjct: 455 YSEAFDDKDEQEVIDLDDDDDEPDPNIQQPDDHTESTSKECASVNVKYEDNDVKLSLVSN 514
Query: 192 TDN 200
D+
Sbjct: 515 GDD 517
>Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical
protein F13H10.6 protein.
Length = 88
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = -3
Query: 386 PPHFVNRPSIRPASV*FQLPMVGSHQQTAQKIPHYKQNWAMVAPNRQLKGFRIISRTNC 210
PP + +P P +P G + Q+ P+Y Q +V + G R NC
Sbjct: 9 PPPYTQQPGYPPPGSAGYVPQQGGYYPQGQQGPYYPQQPHVVVVEERRGGGRSGGSDNC 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,856
Number of Sequences: 27780
Number of extensions: 280939
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -