Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1457
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 290 PHYKQNWAMVAPNRQLKGFRIISRTNCF 207
           P ++QNWA + P ++L    ++ R + F
Sbjct: 149 PIFRQNWASLQPYKKL-SVEVVRREHPF 175


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 108 ETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSS 221
           E A   + L + N + DD + + CL+   +   + +SS
Sbjct: 291 EKALQGDDLRTANIIADDPEGVSCLVIDRETFNQLISS 328


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 332 TGTKRKLDEYLDDSQSVVGQFN 397
           TGT RK DE     Q ++G  N
Sbjct: 248 TGTIRKCDESSPHDQVIIGGSN 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,539
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)