Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1457
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc...    31   0.49 
At3g12420.1 68416.m01547 hypothetical protein                          31   0.85 
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    29   3.4  
At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2) ...    29   3.4  
At1g79030.1 68414.m09215 DNAJ heat shock N-terminal domain-conta...    27   7.9  
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    27   7.9  

>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
           nuclear gene encoding mitochondrial protein - Homo
           sapiens, EMBL:AF026849 contains Pfam profile: ATPase
           family PF00004
          Length = 470

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +1

Query: 493 CFNSRITHYFTNDFAPYL-MRFDDND-YNSNRFF 588
           CF  R++ +FTN F+PY+ + F ++D Y+ N+ F
Sbjct: 49  CFAQRVSDHFTNLFSPYVEIHFPESDEYSFNQAF 82


>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 550 RFDDNDYNSNRFFDHMSETGYY 615
           R+D ND   NR++DH +E GYY
Sbjct: 117 RYDANDLPPNRYYDHQTE-GYY 137


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 84  LHPAWDCYNNSNSRW 40
           L  AWDCY ++N RW
Sbjct: 423 LSTAWDCYMDANDRW 437


>At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2)
           nearly identical to receptor-like serine/threonine
           kinase GI:2465925 from [Arabidopsis thaliana];  intron 3
           was added to circumvent a frameshift.  Either a
           sequencing error exists or this may be a pseudogene.
          Length = 600

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 490 GCFNSRITHYFTNDFAPYLMRFDDNDYNSNRFFDHMSE 603
           GC+    TH F +D A +    D  ++  + FF H+S+
Sbjct: 227 GCYLKYSTHKFFDDAAEHKPDADQRNFIRSSFFPHLSD 264


>At1g79030.1 68414.m09215 DNAJ heat shock N-terminal
           domain-containing protein / S-locus protein, putative
           similar to S-locus protein 5 (GI:6069485) [Brassica
           rapa]; contains Pfam profile PF00226 DnaJ domain
          Length = 416

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 138 SVNSLTDDNDIMECLLKTTDNLGE 209
           S+N     NDI+ CLL+  DNL E
Sbjct: 124 SINLAFLSNDILNCLLQWCDNLSE 147


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  PDGADTVVSDSETAAASNFLASVNS 149
           PD A+ +++DSE  A +  L S+NS
Sbjct: 761 PDDAEELLADSEDMAQTGILVSINS 785


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,096,843
Number of Sequences: 28952
Number of extensions: 253925
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)