Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1456
         (629 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    77   5e-13
UniRef50_UPI00004984C3 Cluster: actin binding protein; n=1; Enta...    36   0.61 
UniRef50_UPI0000ECA57E Cluster: UPI0000ECA57E related cluster; n...    34   2.4  
UniRef50_UPI0000EB32C5 Cluster: UPI0000EB32C5 related cluster; n...    33   5.7  
UniRef50_Q17727 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 76.6 bits (180), Expect = 5e-13
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -1

Query: 629  RYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 528
            RYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR
Sbjct: 953  RYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_UPI00004984C3 Cluster: actin binding protein; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: actin binding
           protein - Entamoeba histolytica HM-1:IMSS
          Length = 769

 Score = 36.3 bits (80), Expect = 0.61
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +1

Query: 343 VHSFKSFQNYIFKTISLRVTTTELNTFSISNITTQNVVNLLKKTEFALIG-RRAYCHLMV 519
           + S +++  ++  ++ ++   TEL      N   QNVVN LK+TE +++G  + Y  ++ 
Sbjct: 593 IGSSQTYAEFLTTSVDVKSVETELKVCCDVNDDLQNVVNSLKQTETSIVGINKIYADMIS 652

Query: 520 SG 525
           SG
Sbjct: 653 SG 654


>UniRef50_UPI0000ECA57E Cluster: UPI0000ECA57E related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECA57E UniRef100 entry -
           Gallus gallus
          Length = 95

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 260 HTNNEKKNQFRTTMWELLSTGNFAVTTKYTVLNLFKIIYLRQ 385
           H+NNE +N     +   LSTG+  +   + VLN+  +++LRQ
Sbjct: 37  HSNNESRNCSGELLLPCLSTGSLLLEGAFFVLNVTNVLFLRQ 78


>UniRef50_UPI0000EB32C5 Cluster: UPI0000EB32C5 related cluster; n=1;
           Canis lupus familiaris|Rep: UPI0000EB32C5 UniRef100
           entry - Canis familiaris
          Length = 664

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 402 NYGIEYIQYKQHHNTKR-CKSIKKNRICPYRQTSILPPDGE-WLPSP 536
           NY + Y  + Q + T   C+S+++    PY  T+I+ P G  W  SP
Sbjct: 175 NYTVNYATHTQTNKTSSFCRSVRRQAGTPYPVTTIIAPPGHTWGASP 221


>UniRef50_Q17727 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 230

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 185 VAHLRCRCL-WASVTT*HQVGCELATHTNNEKKNQFRTTMWELLSTGNFAVTTKYT 349
           VA  +C C  W   +T   +GCEL     N+ + +FR  +     +G+F  +  YT
Sbjct: 30  VAERQCICASWEKASTQSDIGCELVARLLNDNRTRFRALL--ECKSGSFLGSGNYT 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,421,092
Number of Sequences: 1657284
Number of extensions: 13728736
Number of successful extensions: 34854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34850
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)