Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1456
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    28   1.3  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    28   1.3  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   5.2  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   5.2  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   6.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.8  

>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 346 HSFKSFQNYIFKTISLRVTTTELNTFSISNITTQNVVNLLKK 471
           HS K F N   K   L++T++E+    +  +  +N+   +KK
Sbjct: 4   HSCKGFMNVNLKKKQLQITSSEIIEHVLEELNLKNIERRVKK 45


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 287 IGFFFHCLYGWRAHSPPGVKWLLKPIDIYNVNAPPS 180
           I F+F  ++ +  ++  G+ W+ K   IY+VN  PS
Sbjct: 134 IRFWFFLIFYYGIYNAVGLLWITKLFHIYSVNWCPS 169


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 146 YKGCPTLQTETHYCFTAELGKA 81
           Y  CP L +   +CF+A   KA
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 236 QVGCELATHTNNEKKNQFRTTMWELLSTGNFAVTTKYTV 352
           Q+   LA +TNN+        +W+  +T  F     YTV
Sbjct: 247 QLAARLARYTNNDTYVDLAQKVWDWSTTVGFVDLDDYTV 285


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 251 LATHTNNEKKNQFRTTMWELLSTGNF 328
           + TH NN KKN +   +++ +S+  F
Sbjct: 207 MLTHENNNKKNSYVFRLFDRVSSSTF 232


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 257 WRAHSPPGVKWLLKPIDIYNVNAPPSLR 174
           + A  PP +K    P+DI N++A   L+
Sbjct: 222 YSASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,798
Number of Sequences: 5004
Number of extensions: 57481
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)