Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1456
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   3.0  
01_07_0114 + 41161923-41163251                                         28   5.3  
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323...    28   7.0  
07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718...    27   9.3  
06_01_0734 + 5419951-5420475                                           27   9.3  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    27   9.3  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 157 SSIVTKAAPPFKPKRIT--ASRQN*ARRWYLSV 65
           SS+ + AAPPF P RIT  A+  N  R +++SV
Sbjct: 164 SSVASAAAPPFDPSRITSYAAHPN-GRAFFVSV 195


>01_07_0114 + 41161923-41163251
          Length = 442

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 376 FKTISLRVTTTELNTFSISNITTQNVVNLLKKTEFALIGRRAYCHLMVS 522
           F  ++   +T +L TF++S  +T N    L   EFA +G  A   L+ S
Sbjct: 123 FNPVTGECSTGDLTTFAMSANSTVNGTRTLHPEEFAAVGSCAPQRLLAS 171


>11_01_0421 +
           3236798-3237144,3237356-3237441,3237741-3237895,
           3237971-3238035,3238180-3238363,3238785-3239048,
           3239141-3239224,3239727-3239984,3240214-3240472,
           3240550-3240755,3240896-3240946,3241041-3241337
          Length = 751

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 228 LNTRWAVSSPPIQTMKKKTNSGRQCGNFLVLG 323
           +  +W +  P  + +  +TN  R CG+F  +G
Sbjct: 490 IRNQWILCDPGAECLLSQTNEDRTCGDFKEMG 521


>07_01_0864 -
           7185070-7185141,7185274-7185402,7185585-7185695,
           7186114-7186292,7186479-7186576,7186691-7186956,
           7187895-7188050,7188131-7188319,7188711-7188824,
           7189131-7189273,7189683-7189818,7189954-7190058
          Length = 565

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 147 LQRLPHPSNRNALLLHGRIRQGGGTCPCRLTRGLK 43
           L R PHP++   L L   +  GGG  P R+ R ++
Sbjct: 18  LHRHPHPAHHRRLRLLPLVAGGGGGSPPRVGRRIR 52


>06_01_0734 + 5419951-5420475
          Length = 174

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 613 SSNEACGEY*AVGSGLALPLALLKSMGDGNHSPSG 509
           S+  A  +    G GL   LA L  MGDG  SP G
Sbjct: 96  SAAAAAADRRGAGGGLMYLLAQLMGMGDGGGSPYG 130


>02_05_1224 +
           35045268-35045270,35045735-35045863,35046037-35046180,
           35046306-35046451,35046583-35046739,35046838-35046896,
           35046978-35047137,35047716-35047865,35047969-35048105,
           35048186-35048332,35048428-35048540,35048880-35048971,
           35049637-35049738,35050108-35050145,35050255-35050381,
           35050462-35050632,35050721-35050852,35050929-35051038,
           35051118-35051178,35051386-35051427,35051756-35051933,
           35052043-35052248,35052843-35052962,35053138-35053182,
           35053310-35053408,35053846-35054058,35054254-35054393,
           35054469-35054583,35054684-35054722,35054816-35054899,
           35054969-35055139,35055891-35056100,35056193-35056378,
           35056473-35056601,35056679-35056749,35056834-35056933,
           35057016-35057072,35057778-35057834,35057940-35058020,
           35058256-35058338,35058448-35058562
          Length = 1572

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 361 FQNYIFKTISLRVTTTELNTFSISNITTQNVVNLLKKTEFALI 489
           FQ ++FK      T  E+N   I  I  Q+V++L++K    +I
Sbjct: 477 FQKHVFKMEQEEYTKEEINWSYIEFIDNQDVLDLIEKKPGGII 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,401,893
Number of Sequences: 37544
Number of extensions: 397544
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)