Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1456
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6) 31 0.58
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 31 1.0
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 28 7.2
SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23) 27 9.5
SB_47206| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.25) 27 9.5
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 27 9.5
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.5
>SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)
Length = 303
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 459 IYNVLC--CDVAYTECIQFRSC-HAK*NCLKYIILKRFK 352
++N +C C V + I F SC H K C KY+IL + K
Sbjct: 28 LFNEICVVCSVVGPKVIVFLSCVHVKRPCCKYVILPKLK 66
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 352 NCVLSCYCEVPSTKKFPHCRPELV 281
NC YCE P+ K P C PE V
Sbjct: 1525 NCTAGKYCEGPAGSKCPECSPEPV 1548
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 367 NYIFKTISLRVTTTELNTFSISNITTQNVVNLLKKTEFALIGRRAYCHLMVS-GYRRP 537
N + + I+L T T L+ S + N L K E+A R+Y + MV+ ++RP
Sbjct: 501 NNLLRVITLNATPTSLSFCSQKGDLLVGIGNHLHKIEYATYMPRSYIYRMVAMEFQRP 558
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 245 CELATHTNNEKKNQFRTTMWELLSTGNFAVTTKYTVL 355
C L+T TN + + ++W ST N +T +Y +L
Sbjct: 503 CRLSTTTNRRWRAERYLSLWTEASTANERLTIRYRLL 539
>SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 441 NTKRCKSIKKN--RICPYRQTS--ILPPDGEWLPSPMDFSNARGRAKPLPTA*YSPQASF 608
+T+R SI+KN ++ ++ TS + P G ++ P + N R +PL T ++ +
Sbjct: 255 STQRLPSIEKNVQQLLRFKTTSNETVSPHGYFIFRPFAWYNERLTKRPLLTKAFTAGVLY 314
Query: 609 EEGHVIA 629
G VIA
Sbjct: 315 SVGDVIA 321
>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
Length = 977
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 447 KRCKSIKKNRICPYRQTSILPPDGEWLPSPMDF 545
K +SI + R Y QTS+ +G+W+ S ++F
Sbjct: 681 KGSESIPRGRRIFYAQTSLRAREGQWVLSDLEF 713
>SB_47206| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.25)
Length = 340
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -1
Query: 626 YDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR*PLTIRWQYARLPIRANSVFFNRFTTF 447
Y +S F G W ++ R+ L +APG+ T+ + RL A S F +F +
Sbjct: 148 YILSCFFNGTWIIIWQRKYLSAAPGVLFAICFALYATLFMSFYRLNKFAKS-NFRKFDFW 206
Query: 446 CVVMLL 429
C+ +L+
Sbjct: 207 CIQVLV 212
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 382 TISLRVTTTELNTFSISNITTQNVVNLLKKTEFALIGRRAYCHLMVSGY 528
TI + LN F +TT + L + T F LI A+C +++ Y
Sbjct: 622 TILFGILALLLNLFVF--VTTVGIKPLRRMTPFLLIAHMAFCDILIGVY 668
>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 456 YNVLCCDVAYTECIQFRSCH 397
+N+LC D + + FRSCH
Sbjct: 55 WNILCRDSRFWGAVDFRSCH 74
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 403 TTELNTFSISNITTQNVVNLLKKTEFALIGRRAYCHLMVSGYRRPWTSAMPGAEPSR 573
TT L T + + TT N + T ++G +Y VSG R W+S E SR
Sbjct: 594 TTTLPTETATIPTTANGSSTKAPTTNPVMGSSSYLEFKVSGARVIWSSGYQKFELSR 650
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,600,930
Number of Sequences: 59808
Number of extensions: 437232
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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