Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1456
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical p...    29   2.1  
AF003130-18|AAO38640.1|  441|Caenorhabditis elegans Prion-like-(...    28   4.8  
AF003130-17|AAB54127.1|  470|Caenorhabditis elegans Prion-like-(...    28   4.8  
AF003130-16|AAK68879.1|  457|Caenorhabditis elegans Prion-like-(...    28   4.8  
AF003130-15|AAM45365.1|  465|Caenorhabditis elegans Prion-like-(...    28   4.8  

>U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical
           protein C06E4.7 protein.
          Length = 230

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 185 VAHLRCRCL-WASVTT*HQVGCELATHTNNEKKNQFRTTMWELLSTGNFAVTTKYT 349
           VA  +C C  W   +T   +GCEL     N+ + +FR  +     +G+F  +  YT
Sbjct: 30  VAERQCICASWEKASTQSDIGCELVARLLNDNRTRFRALL--ECKSGSFLGSGNYT 83


>Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical
           protein T26E3.8 protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 337 N*VHSFKSFQNYIFKTISLRVTTTELNTFSISNITTQNVVNLLKKTEFALIGRRAYCHLM 516
           N +  F+   +YIFK + +     E+N     ++  + ++N+L+   +  I R +Y +  
Sbjct: 86  NNIGKFRDKISYIFKCVKVYRYDIEVNHRREEDV--RQILNILRSVRYCTISRMSYTNQR 143

Query: 517 VSG 525
           +SG
Sbjct: 144 ISG 146


>AF003130-18|AAO38640.1|  441|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform d protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 445 QNVVNLLKKTEFALIGRRAYCHLMVSGYR--RPW 540
           + +++ +K  E    G   YCHL++ GY+  +PW
Sbjct: 260 ERLIDTVKPEEIRGGGLLKYCHLIIRGYKAAKPW 293


>AF003130-17|AAB54127.1|  470|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform a protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 445 QNVVNLLKKTEFALIGRRAYCHLMVSGYR--RPW 540
           + +++ +K  E    G   YCHL++ GY+  +PW
Sbjct: 289 ERLIDTVKPEEIRGGGLLKYCHLIIRGYKAAKPW 322


>AF003130-16|AAK68879.1|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform b protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 445 QNVVNLLKKTEFALIGRRAYCHLMVSGYR--RPW 540
           + +++ +K  E    G   YCHL++ GY+  +PW
Sbjct: 276 ERLIDTVKPEEIRGGGLLKYCHLIIRGYKAAKPW 309


>AF003130-15|AAM45365.1|  465|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform c protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 445 QNVVNLLKKTEFALIGRRAYCHLMVSGYR--RPW 540
           + +++ +K  E    G   YCHL++ GY+  +PW
Sbjct: 284 ERLIDTVKPEEIRGGGLLKYCHLIIRGYKAAKPW 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,897
Number of Sequences: 27780
Number of extensions: 331063
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)