Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1456
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.80 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 504 LPPDGEWLPSPMDFSNARG 560
           LPPD  W P  + F+NA G
Sbjct: 103 LPPDKVWKPDIVLFNNADG 121


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 505 CHLMVSGYRRPW 540
           CHL    + RPW
Sbjct: 45  CHLCGKAFSRPW 56


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  LVSLHGQVPPPCLILP 100
           L S  G++P PC++ P
Sbjct: 28  LPSWDGKMPQPCILKP 43


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 351 TVYLVVTAKFPVLRSSHIVVLNWFFFSLFVWVASSQPTWC*VVTEAHRH 205
           TV+L + A+     S  + +L  +F  +   VASS  +   ++   HR+
Sbjct: 274 TVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRN 322


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 449 FCVVMLLILNVFNSVVVTRSEIVLN 375
           F + + L+L++FN VVV  +   LN
Sbjct: 601 FSLGLFLLLDMFNCVVVEETIPSLN 625


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 170 YISSWVAHLRCRCLWASVT 226
           ++  W  H +CR   ASVT
Sbjct: 426 FVEFWEHHFQCRYPNASVT 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,358
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)