Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1456
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48050.1 68415.m06014 expressed protein ; expression supporte...    28   4.4  
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea...    27   7.8  
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea...    27   7.8  
At1g19130.1 68414.m02379 expressed protein                             27   7.8  

>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 492  QTSILPPDGEWLPSPMDFS---NARGRAKPL 575
            Q+SI   DG+W+PS  DF+   NARG  K L
Sbjct: 1102 QSSITVKDGDWVPS-ADFTSRRNARGSQKDL 1131


>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 296

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 295 DNVGTS*YWELRSNN*VHSFKSFQNYI----FKTISLR-VTTTELNTFSISNITTQNVVN 459
           D+ G    W+ R  +  H F + ++YI    F + S++ V T+   T S+ N+ T  V +
Sbjct: 55  DDKGCVKIWDTRQRSCSHEFNAHEDYISGMTFASDSMKLVVTSGDGTLSVCNLRTSKVQS 114

Query: 460 LLKKTEFALI 489
             + +E  L+
Sbjct: 115 QSEFSEDELL 124


>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 353

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 295 DNVGTS*YWELRSNN*VHSFKSFQNYI----FKTISLR-VTTTELNTFSISNITTQNVVN 459
           D+ G    W+ R  +  H F + ++YI    F + S++ V T+   T S+ N+ T  V +
Sbjct: 112 DDKGCVKIWDTRQRSCSHEFNAHEDYISGMTFASDSMKLVVTSGDGTLSVCNLRTSKVQS 171

Query: 460 LLKKTEFALI 489
             + +E  L+
Sbjct: 172 QSEFSEDELL 181


>At1g19130.1 68414.m02379 expressed protein
          Length = 187

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 126 SNRNALLLHGRIRQGGGTCPCRLTRGLKNYISELNY 19
           S+RNAL+ +   R    +  C LTR  + Y+ E  Y
Sbjct: 146 SSRNALISYQGFRNTSHSSQCYLTRSERAYLEETPY 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,339
Number of Sequences: 28952
Number of extensions: 307650
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)