Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1455
(546 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 151 1e-35
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 134 2e-30
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 122 7e-27
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 118 9e-26
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 7e-23
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 104 1e-21
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 97 2e-19
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 86 4e-16
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 83 3e-15
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 80 4e-14
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 73 3e-12
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 73 4e-12
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 72 1e-11
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 69 5e-11
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 67 2e-10
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 65 1e-09
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 61 2e-08
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 60 4e-08
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 52 1e-05
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 36 0.81
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 1.1
UniRef50_Q9FGR7 Cluster: Similarity to salt-inducible protein; n... 33 3.3
UniRef50_A7QM66 Cluster: Chromosome chr5 scaffold_124, whole gen... 33 3.3
UniRef50_Q981Z6 Cluster: Virulence factor SrfB homolog; n=1; Mes... 33 4.3
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 4.3
UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3; ... 33 5.7
UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2; Desulf... 32 7.5
UniRef50_A5B1J3 Cluster: Putative uncharacterized protein; n=1; ... 32 7.5
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 32 7.5
UniRef50_Q6BJC6 Cluster: Similarity; n=1; Debaryomyces hansenii|... 32 7.5
UniRef50_Q47207 Cluster: FasG protein precursor; n=1; Escherichi... 32 9.9
UniRef50_A5V7X6 Cluster: TonB-dependent receptor precursor; n=1;... 32 9.9
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 151 bits (366), Expect = 1e-35
Identities = 70/76 (92%), Positives = 74/76 (97%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 207 AQVRFVTGKKILRIMK 254
AQVRFVTG KILRI+K
Sbjct: 61 AQVRFVTGNKILRILK 76
Score = 147 bits (356), Expect = 2e-34
Identities = 68/76 (89%), Positives = 74/76 (97%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
++ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYKTK VL
Sbjct: 76 KSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVL 135
Query: 431 PPNWKYESSTASALVA 478
PPNWKYESSTASALVA
Sbjct: 136 PPNWKYESSTASALVA 151
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 134 bits (323), Expect = 2e-30
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
+A GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK L
Sbjct: 76 KAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKL 135
Query: 431 PPNWKYESSTASALVA 478
PP WKYES+TAS LVA
Sbjct: 136 PPVWKYESTTASTLVA 151
Score = 118 bits (283), Expect = 1e-25
Identities = 55/76 (72%), Positives = 62/76 (81%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
MGRMH+ GKGIS SALPY+RS P+WLK T DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 207 AQVRFVTGKKILRIMK 254
QV+ VTG KILRI+K
Sbjct: 61 PQVKSVTGSKILRILK 76
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 122 bits (293), Expect = 7e-27
Identities = 54/73 (73%), Positives = 64/73 (87%)
Frame = +2
Query: 260 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 439
GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+RLILVESRIHRLARYYK LPP
Sbjct: 79 GLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVESRIHRLARYYKRVKQLPPT 138
Query: 440 WKYESSTASALVA 478
WKYESSTASA+VA
Sbjct: 139 WKYESSTASAMVA 151
Score = 94.3 bits (224), Expect = 2e-18
Identities = 43/76 (56%), Positives = 58/76 (76%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
M RMH G+G + SALPYRR+ P WLK+ + +V + + K +KG+ PSQIG+ LRDS G+
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGI 60
Query: 207 AQVRFVTGKKILRIMK 254
AQV+ VTG+KILRI+K
Sbjct: 61 AQVKNVTGRKILRILK 76
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 118 bits (284), Expect = 9e-26
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = +2
Query: 260 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 439
GLA DLP DLY+LIKKAVA++KHLERNRKDKD+KF L L ESRIH LARY KTK +LPP+
Sbjct: 59 GLALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTESRIHPLARYCKTKRMLPPS 118
Query: 440 WKYESSTASALVA 478
WKYES +ASALVA
Sbjct: 119 WKYESPSASALVA 131
Score = 98.7 bits (235), Expect = 8e-20
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
MG MHAP K +SQS LPY SV WLK T+DD+KEQIYKL KKGLTPSQIGV LRD+HG+
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHGL 60
Query: 207 A 209
A
Sbjct: 61 A 61
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 7e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +2
Query: 263 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 442
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 443 K 445
K
Sbjct: 129 K 129
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 104 bits (250), Expect = 1e-21
Identities = 44/66 (66%), Positives = 58/66 (87%)
Frame = +2
Query: 260 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 439
GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IHRL+RYYK +P N
Sbjct: 76 GLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSRYYKRIQRIPIN 135
Query: 440 WKYESS 457
W+++SS
Sbjct: 136 WRFDSS 141
Score = 71.3 bits (167), Expect = 1e-11
Identities = 31/69 (44%), Positives = 47/69 (68%)
Frame = +3
Query: 51 KGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 230
KGI+ S +P+ R+ P W+K + + + E I L KKGL PSQIG LRDS G+ V+ + G
Sbjct: 6 KGIASSLIPFERNAPLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAG 65
Query: 231 KKILRIMKQ 257
+ I++I+K+
Sbjct: 66 RNIVKILKK 74
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 97.1 bits (231), Expect = 2e-19
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 18 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 194
AA GR+H PGKG+S+SAL Y SVPTWLKLT+D+VKEQIYKL KKGLTP QIGV+LRD
Sbjct: 211 AAITGRIHVPGKGLSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 86.2 bits (204), Expect = 4e-16
Identities = 40/75 (53%), Positives = 53/75 (70%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
E GLAP++PEDL +LIK+AV +RKHLE++ KD S L L+ES+I RL +YYK K L
Sbjct: 83 EKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKL 142
Query: 431 PPNWKYESSTASALV 475
P +W+Y+ A LV
Sbjct: 143 PKDWRYDPEQAKLLV 157
Score = 58.8 bits (136), Expect = 8e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG +LRD +G+
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 207 AQVR 218
V+
Sbjct: 61 PTVK 64
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 83.4 bits (197), Expect = 3e-15
Identities = 39/72 (54%), Positives = 52/72 (72%)
Frame = +2
Query: 260 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 439
GL P +PEDL L+++AV +RKHLE++ KD SK L L+ES+I RL +YYK+K VLP +
Sbjct: 79 GLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPAD 138
Query: 440 WKYESSTASALV 475
W+Y TA LV
Sbjct: 139 WRYTPETARLLV 150
Score = 81.0 bits (191), Expect = 2e-14
Identities = 35/77 (45%), Positives = 54/77 (70%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
M RMHA +G S S P R+ VP W++ T + V++ + +L KKG +QIG++LRD++G+
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 60
Query: 207 AQVRFVTGKKILRIMKQ 257
V+ +TGKKI +IMK+
Sbjct: 61 PDVKLITGKKISKIMKE 77
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 79.8 bits (188), Expect = 4e-14
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
E GL PD+P DL YL+K+A + KH+E N +D +K L+ S+IHRLA+YYK K VL
Sbjct: 78 EEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVL 137
Query: 431 PPNWKYESSTA 463
P +WKY A
Sbjct: 138 PKDWKYSIEIA 148
Score = 55.2 bits (127), Expect = 9e-07
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +3
Query: 27 MGRMHAPGK--GISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 200
M R+HA + G S S P R + P W + V+ +I +L K+G +P+ IG++LRD +
Sbjct: 1 MSRLHAHKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQY 60
Query: 201 GVAQVRFVTGKKILRIMKQ 257
G+ VR GK + +++
Sbjct: 61 GIPDVRLYIGKSLQDFLEE 79
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 73.3 bits (172), Expect = 3e-12
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = +2
Query: 260 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 439
G+ P +P DL L+ +A +R HL RKD +K+RLILV SR++R+ARYYK K +P N
Sbjct: 79 GVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKRKMRIPGN 138
Query: 440 WK 445
WK
Sbjct: 139 WK 140
Score = 70.5 bits (165), Expect = 2e-11
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
M +MH+ GKG S S PY + PTWL + D++K + ++G KG+ IG LRD +G+
Sbjct: 1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGI 60
Query: 207 AQVRFVTGKKILRIMKQ 257
+ V G+ I R +++
Sbjct: 61 GKASDVLGESITRFLQR 77
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 72.9 bits (171), Expect = 4e-12
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +2
Query: 260 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 439
GL P +PEDL+YLIKKA ++ HL + D +++ L L+ES I+RL+RYYK LP N
Sbjct: 80 GLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLIESHIYRLSRYYKRIFRLPKN 139
Query: 440 WKYESS 457
WKY S+
Sbjct: 140 WKYISN 145
Score = 59.7 bits (138), Expect = 4e-08
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGK-KGLTPSQIGVMLRDSHG 203
MG+M++ GKGIS + +PYR+ W LT+ ++ + I L K L PS+IG++LRD
Sbjct: 1 MGKMYSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKL 60
Query: 204 VAQVRFVTGKKILRIMK 254
V R ++G I +I++
Sbjct: 61 VVDTRNISGMNISKILR 77
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 71.7 bits (168), Expect = 1e-11
Identities = 34/63 (53%), Positives = 45/63 (71%)
Frame = +2
Query: 260 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 439
G+ PEDL LIKKA+ +R HLE +RKDK ++ L L+E++I RL+ YYK K VLP +
Sbjct: 79 GVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSYYKEKGVLPAD 138
Query: 440 WKY 448
WKY
Sbjct: 139 WKY 141
Score = 71.3 bits (167), Expect = 1e-11
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
M R+HA +G S S YR S P W+ ++ ++V++++ +L +G PS IG++LRD +G+
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGI 60
Query: 207 AQVRFVTGKKILRIMKQ 257
V+ VTGKKI +I+K+
Sbjct: 61 PSVKQVTGKKIQKILKE 77
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 69.3 bits (162), Expect = 5e-11
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
E G P+LPEDL +++KAV +++HL N+ D+ + L L+E+++HRL YYK +
Sbjct: 75 EEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRIGRI 134
Query: 431 PPNWKYESSTA 463
P +WKY+S A
Sbjct: 135 PKDWKYKSVVA 145
Score = 64.5 bits (150), Expect = 2e-09
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
MGR+H+ G S S P P+W++ +V++ I K K+GL PSQIG LRD H +
Sbjct: 1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAI 59
Query: 207 AQVRFVTGKKILRIMKQ 257
R +TGK + +IM++
Sbjct: 60 PLTRPITGKSVTQIMEE 76
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 67.3 bits (157), Expect = 2e-10
Identities = 29/71 (40%), Positives = 47/71 (66%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
E L ++PEDL ++KKAV +++HL+ N+ D+ + L L+E+++HRL+ YYK +
Sbjct: 76 EENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIGRI 135
Query: 431 PPNWKYESSTA 463
P WKY+S A
Sbjct: 136 PATWKYKSVVA 146
Score = 66.1 bits (154), Expect = 5e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
MGRMH G S S P P+W+ + +++E + K K GLTPSQIG+ LRD H +
Sbjct: 1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSI 60
Query: 207 AQVRFVTGKKILRIMKQ 257
++ +T K I I+++
Sbjct: 61 PLIKPITKKTIGEILEE 77
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 64.9 bits (151), Expect = 1e-09
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3
Query: 18 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVK 128
+A +GRMHAPGKG+SQSALPYRRSV WLKL +DDVK
Sbjct: 441 SAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 60.9 bits (141), Expect = 2e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
M RM+A +G S S+ P+ P W A +++ I + K G++ +QIG +LRD H V
Sbjct: 1 MARMYASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAV 60
Query: 207 AQVRFVTGKKILRIMKQ 257
VR V GK+I ++ +
Sbjct: 61 PNVRLVLGKRIGAVLSE 77
Score = 55.6 bits (128), Expect = 7e-07
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = +2
Query: 278 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 457
PEDL L+++AVA+ +HL N +D +K L L E++I RL YYK + L +W+Y+
Sbjct: 85 PEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEAKIRRLGNYYKAEGRLDSDWRYKRD 144
Query: 458 TASALV 475
+V
Sbjct: 145 QLRLIV 150
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 59.7 bits (138), Expect = 4e-08
Identities = 28/77 (36%), Positives = 46/77 (59%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
M RMH +G S S R P+W++ + D++KE I K+ K+G+T S IG+ LRD + +
Sbjct: 1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAI 60
Query: 207 AQVRFVTGKKILRIMKQ 257
R V K+ +++K+
Sbjct: 61 PGTRPVLHMKLGQVLKE 77
Score = 55.2 bits (127), Expect = 9e-07
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +2
Query: 263 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 442
L D+PEDL LI++ KHL N+ D ++K + L+ S++ RL RYYK S LP +W
Sbjct: 80 LESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTSRLPQDW 139
Query: 443 KYE 451
E
Sbjct: 140 SLE 142
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 51.6 bits (118), Expect = 1e-05
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDS--H 200
M RMH +G S S P P W + D ++ ++ +L ++G +PS+IG+ LRD
Sbjct: 1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQ 60
Query: 201 G--VAQVRFVTGKKILRIMKQ 257
G + V TGKK+ I+++
Sbjct: 61 GTPIPDVSLATGKKVTEILEE 81
Score = 49.2 bits (112), Expect = 6e-05
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = +2
Query: 269 PDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 448
PDLPEDL L+++AV +R H++ N D +K L +S+I RL YY+ V N+ Y
Sbjct: 86 PDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDYYRGDEV-DENFTY 144
Query: 449 ESSTA 463
A
Sbjct: 145 SYDNA 149
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 35.5 bits (78), Expect = 0.81
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 87 SVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 218
+VPTW+K T D + +++ +L K+GL +M+ D+ G AQ +
Sbjct: 57 AVPTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 296 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 448
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_Q9FGR7 Cluster: Similarity to salt-inducible protein; n=2;
core eudicotyledons|Rep: Similarity to salt-inducible
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 723
Score = 33.5 bits (73), Expect = 3.3
Identities = 22/85 (25%), Positives = 45/85 (52%)
Frame = +2
Query: 215 KIRNWQKDPPYHEAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 394
++R++++ YH+ M + +P+ Y +A+ K +NRKDK + L ++ S+
Sbjct: 637 RVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINSKFG 694
Query: 395 RLARYYKTKSVLPPNWKYESSTASA 469
R+ KTK WKY+++ ++
Sbjct: 695 RVKA--KTKGKKDEFWKYKTNRTTS 717
>UniRef50_A7QM66 Cluster: Chromosome chr5 scaffold_124, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_124, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1255
Score = 33.5 bits (73), Expect = 3.3
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = -2
Query: 284 PPVSQELDPLLHDTEDLFASYESYLGNSM*IPQHYTNL*GSETLLSKFVNLFLYIVGSQF 105
P + +LD L + ED S S+ G+S + + +E +K +NL+LY+ F
Sbjct: 252 PSPTVKLDALEEEIEDDSESISSF-GSSRSLREELAGNVTTEKQENKVINLYLYMPSQDF 310
Query: 104 QPGRDTA 84
P DTA
Sbjct: 311 SPEEDTA 317
>UniRef50_Q981Z6 Cluster: Virulence factor SrfB homolog; n=1;
Mesorhizobium loti|Rep: Virulence factor SrfB homolog -
Rhizobium loti (Mesorhizobium loti)
Length = 1041
Score = 33.1 bits (72), Expect = 4.3
Identities = 18/100 (18%), Positives = 45/100 (45%)
Frame = +2
Query: 125 KGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPYHEAMGLAPDLPEDLYYLIK 304
+ + L+ EG+ + T + + + WS ++ W+ H G P + +Y +
Sbjct: 363 EASRLRGESEGTEAATGLSSPKRYLWSSDPVLQEWRFRSASHSDSGTEPLIERSMYRFVN 422
Query: 305 KAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 424
+ + +E +R+ KF++ + E + +R+ ++S
Sbjct: 423 NRGDVLQQIEEDRR----KFKVKVKEGDLETASRFCFSRS 458
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 4.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 296 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 445
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
>UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3;
Brucella|Rep: Putative uncharacterized protein -
Brucella suis
Length = 276
Score = 32.7 bits (71), Expect = 5.7
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 90 VPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQV 215
+PTWL L ++ Y+L K +TP+ IG+ + + G++++
Sbjct: 149 LPTWLGLRRGKLRPLYYRLIHKEVTPASIGITVFGNDGISRL 190
>UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep:
ComEC/Rec2-related protein - Desulfovibrio vulgaris
subsp. vulgaris (strain DP4)
Length = 979
Score = 32.3 bits (70), Expect = 7.5
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 39 HAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
+A G G++ +ALP S P W+ A V + + GL ++ +MLRD H V
Sbjct: 60 YAAGWGVALAALPETPSAPAWVTGKAQRVTGIVDDV--DGLPDGRLRIMLRDVHPV 113
>UniRef50_A5B1J3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 345
Score = 32.3 bits (70), Expect = 7.5
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Frame = +2
Query: 194 FTWSCPSKI----RNWQKDPPYHEAMGLAPDLPEDLYYLIKKAVAMRKH-----LERNRK 346
F WS P K+ R+W + YH G + L+YL++KA+ H + N K
Sbjct: 125 FKWSEPIKMIPAKRDWGRKCVYHNDYGHTTEQCRSLHYLVEKAIINYIHGGPVDEKYNSK 184
Query: 347 DKDSKFRLILVESRI 391
K F L ES++
Sbjct: 185 RKKQMFELSPYESKL 199
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 32.3 bits (70), Expect = 7.5
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 96 TWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 245
T L++T D K + + K G+ GV+ R +HG A++R T K +LR
Sbjct: 154 TELRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR 202
>UniRef50_Q6BJC6 Cluster: Similarity; n=1; Debaryomyces
hansenii|Rep: Similarity - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 401
Score = 32.3 bits (70), Expect = 7.5
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +2
Query: 20 RKHGSYARSW*GYLPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFT 199
+K Y+ S L +GA L P EI C C N W++G CNA G
Sbjct: 311 KKQTLYSGSSTSPLDLGA-LNPDLSVRQEIRCNHCGSKNTPEWRKGLDGNRTLCNACGLF 369
Query: 200 WSCPSKIRN 226
+S +K N
Sbjct: 370 YSKLTKKYN 378
>UniRef50_Q47207 Cluster: FasG protein precursor; n=1; Escherichia
coli|Rep: FasG protein precursor - Escherichia coli
Length = 395
Score = 31.9 bits (69), Expect = 9.9
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 137 LQTWKEGSHSLTNWC-NAEGFTWSCPSKIRNWQKDPPYHEAMGLAPDLPEDLYYLIKKAV 313
++TW +L WC N G TW+ S + + P + + P+L YY +
Sbjct: 158 VKTWVGEEINLGGWCGNLFGCTWAETSYLHSSSPKPILW--IKIPPNLKRQTYYFNNVKM 215
Query: 314 AMRKHLERNRKDKDS 358
H+ERN +S
Sbjct: 216 MEIYHIERNNSGSES 230
>UniRef50_A5V7X6 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 818
Score = 31.9 bits (69), Expect = 9.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 48 GKGISQS-ALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 218
G+G++ + YR + PTW + K I+ L GL + RD++G+ +R
Sbjct: 708 GEGLNLTFRADYRITGPTWFSTVQNQTKRSIFDLFFPGLGTGEYAKSRRDAYGILDLR 765
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,056,325
Number of Sequences: 1657284
Number of extensions: 9579867
Number of successful extensions: 26518
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 25772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26512
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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