Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1455
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 118 2e-27
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 118 2e-27
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 105 2e-23
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 103 9e-23
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 30 1.4
11_06_0439 + 23560586-23561650 28 5.6
08_01_0010 + 80052-81419 28 5.6
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 7.4
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 27 7.4
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 27 7.4
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 9.8
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 118 bits (285), Expect = 2e-27
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
+A GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK L
Sbjct: 115 KAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKL 174
Query: 431 PPNWK 445
PP WK
Sbjct: 175 PPTWK 179
Score = 77.8 bits (183), Expect = 5e-15
Identities = 44/85 (51%), Positives = 52/85 (61%), Gaps = 17/85 (20%)
Frame = +3
Query: 51 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 179
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 180 VMLRDSHGVAQVRFVTGKKILRIMK 254
V+LRD HG+ V+ VTG KILRI+K
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILK 115
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 118 bits (285), Expect = 2e-27
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
+A GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK L
Sbjct: 76 KAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKL 135
Query: 431 PPNWK 445
PP WK
Sbjct: 136 PPTWK 140
Score = 105 bits (253), Expect = 2e-23
Identities = 48/76 (63%), Positives = 59/76 (77%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 207 AQVRFVTGKKILRIMK 254
V+ VTG KILRI+K
Sbjct: 61 PLVKSVTGSKILRILK 76
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 105 bits (252), Expect = 2e-23
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
++ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVESR+HRL RYY+ +
Sbjct: 76 KSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAKKI 135
Query: 431 PPNWK 445
P +K
Sbjct: 136 PAFFK 140
Score = 97.1 bits (231), Expect = 8e-21
Identities = 43/76 (56%), Positives = 57/76 (75%)
Frame = +3
Query: 27 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 207 AQVRFVTGKKILRIMK 254
+ VTG KILR++K
Sbjct: 61 PLAQGVTGGKILRVLK 76
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 103 bits (247), Expect = 9e-23
Identities = 49/62 (79%), Positives = 53/62 (85%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
+A GLAP + EDLY+LIKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK L
Sbjct: 133 KAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKL 192
Query: 431 PP 436
PP
Sbjct: 193 PP 194
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +3
Query: 120 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMK 254
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+K
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILK 133
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 63 GRYPYQERAYDPCLRLFT 10
GRYP+ RAYDPC ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312
>11_06_0439 + 23560586-23561650
Length = 354
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 179 CNAEGFTWSCPSKIR-NWQKDPPYHEAMGLAPDLPEDL 289
C EGF WS ++ R W D +H A EDL
Sbjct: 145 CTPEGFVWSISARDRWRWYDDMAFHGGRLYALTQAEDL 182
>08_01_0010 + 80052-81419
Length = 455
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 128 LYIVGSQFQPGRDTAAVRQRRLGDTLTRSVH 36
+++VG F R AAVR+ R G + R VH
Sbjct: 236 VFVVGVAFAVARHPAAVRELRAGPSRMRVVH 266
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 81 RRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 194
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 239 PPYHEAMGLAPDLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYK 415
PP + L P LPE L I + A+ +KHL +K K K +ES+ + +++
Sbjct: 65 PPTQHNVNL-PQLPECLQVSIYRFAMLPKKHLSGAKKRKKRKRGDQFIESQKGAIHKFFS 123
Query: 416 TKSVLPPNWKYESSTAS 466
S P+ E+ S
Sbjct: 124 ASSSAVPDENPEADYPS 140
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +2
Query: 110 DCRRC--KGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPYHEAMGLAPDLPE 283
+C C + + G CNA G W+ +R K PP + + P
Sbjct: 235 ECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPV--PLQIVPAATN 292
Query: 284 DLYYLIKKAVAMRKH 328
D+ I +A + +H
Sbjct: 293 DVQNGIVEATGVEQH 307
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 272 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 370
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,660,393
Number of Sequences: 37544
Number of extensions: 271816
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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