Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1455
(546 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21) 123 1e-28
SB_35545| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04) 29 3.3
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 28 4.3
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11) 28 5.7
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 28 5.7
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
Length = 135
Score = 123 bits (296), Expect = 1e-28
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = +2
Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
+A GLAP LPEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK VL
Sbjct: 71 KAKGLAPSLPEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKRVL 130
Query: 431 PPNWK 445
PPNWK
Sbjct: 131 PPNWK 135
Score = 93.9 bits (223), Expect = 8e-20
Identities = 42/52 (80%), Positives = 49/52 (94%)
Frame = +3
Query: 99 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMK 254
W KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILRI+K
Sbjct: 20 WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILK 71
>SB_35545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 209 PSKIRNWQKDPPYHEAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESR 388
P + N Q P +A+ + P D +Y ++ + R + N + D K + + R
Sbjct: 57 PRRDSNPQSSDPKSDALSIRP---RDYHYGVQNEIVRRPRRDSNPQSSDPKSNALSITPR 113
Query: 389 IHRL 400
+H L
Sbjct: 114 VHLL 117
>SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)
Length = 474
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 296 GSKDPP--VSQELDPLLHDTEDLFASYESYLGNSM*IPQHYTN 174
G D P V EL +L D DL + YES L I +TN
Sbjct: 83 GRTDAPQIVDDELGQILQDQRDLESRYESLLSQREDIKMRFTN 125
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 28.3 bits (60), Expect = 4.3
Identities = 24/108 (22%), Positives = 46/108 (42%)
Frame = +2
Query: 134 NLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPYHEAMGLAPDLPEDLYYLIKKAV 313
N+ T E HS TN + WS + + +W+ P +H P D +++ +
Sbjct: 1644 NISTNSEKKHSETN---KQSDLWSDKTSMPSWKNKPIFH------PQGVVDNFFMNSPVL 1694
Query: 314 AMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 457
K + D K +L+ + +H + + + + + PN K +SS
Sbjct: 1695 FKSKEAKSFPIKSDEKKKLVETVALLHNI--HKQDEMNVAPNLKKQSS 1740
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 257 LLHDTEDLFASYESYLGNSM*IPQHYTNL*G-SETLLSKFVNLF 129
L T L A+Y + + +P +YTNL + T L+ + NLF
Sbjct: 162 LFAPTHSLLANYTNLFAPTHSLPANYTNLFAPTHTTLANYTNLF 205
>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
Length = 733
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 247 IRRIFLPVTNLTWATPCESLSITPI 173
+RRI LP+TN + T E+L +T +
Sbjct: 683 VRRIILPLTNRIYLTGSEALKVTQL 707
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 141 KLGKKGLTPSQIGVMLRD 194
KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 143 TWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPYHEAMGLAPDLP---EDLYYLIKK 307
T E SH ++ CN G+ S P + ++ + P ++ PDL E L L+KK
Sbjct: 606 TLNEKSHEVSRACNLGGWGRSRPGENQSNPRFSPVNQLAKFIPDLATINEPLRQLLKK 663
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 191 GFTWSCPSKIRNWQKDPPYHEAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 361
GF P ++ Q+D GLA P L+Y + +RK L R KD+ K
Sbjct: 2 GFLCFPPRRVATPQEDRICSNPQGLAIRPPSVLWYTERSKDEVRKRLLRVAKDRPRK 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,533,295
Number of Sequences: 59808
Number of extensions: 311702
Number of successful extensions: 752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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