Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1455
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   134   5e-32
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   134   5e-32
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    33   0.094
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    31   0.66 
At1g65720.1 68414.m07459 expressed protein                             29   1.5  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   4.7  
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    28   4.7  
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ...    28   4.7  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   8.2  
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    27   8.2  
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim...    27   8.2  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    27   8.2  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  134 bits (323), Expect = 5e-32
 Identities = 63/76 (82%), Positives = 69/76 (90%)
 Frame = +2

Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
           +A GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    L
Sbjct: 76  KAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKL 135

Query: 431 PPNWKYESSTASALVA 478
           PP WKYES+TAS LVA
Sbjct: 136 PPVWKYESTTASTLVA 151



 Score =  118 bits (285), Expect = 2e-27
 Identities = 55/76 (72%), Positives = 63/76 (82%)
 Frame = +3

Query: 27  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 207 AQVRFVTGKKILRIMK 254
            QV+ VTG KILRI+K
Sbjct: 61  PQVKSVTGSKILRILK 76


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  134 bits (323), Expect = 5e-32
 Identities = 63/76 (82%), Positives = 69/76 (90%)
 Frame = +2

Query: 251 EAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVL 430
           +A GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    L
Sbjct: 76  KAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKL 135

Query: 431 PPNWKYESSTASALVA 478
           PP WKYES+TAS LVA
Sbjct: 136 PPVWKYESTTASTLVA 151



 Score =  118 bits (283), Expect = 3e-27
 Identities = 55/76 (72%), Positives = 62/76 (81%)
 Frame = +3

Query: 27  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 206
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 207 AQVRFVTGKKILRIMK 254
            QV+ VTG KILRI+K
Sbjct: 61  PQVKSVTGSKILRILK 76


>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 22/85 (25%), Positives = 45/85 (52%)
 Frame = +2

Query: 215 KIRNWQKDPPYHEAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 394
           ++R++++   YH+ M  +  +P+   Y   +A+   K   +NRKDK +   L ++ S+  
Sbjct: 637 RVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINSKFG 694

Query: 395 RLARYYKTKSVLPPNWKYESSTASA 469
           R+    KTK      WKY+++  ++
Sbjct: 695 RVKA--KTKGKKDEFWKYKTNRTTS 717


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 63  GRYPYQERAYDPCLRLFT 10
           GRYP+  RAYDPC   ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317


>At1g65720.1 68414.m07459 expressed protein
          Length = 180

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 235 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 80
           FL +T +T A PC++  I+     + P  P+L    FTS+   F  V T+RR
Sbjct: 16  FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 113 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 229
           C  C  TN   W+ G       CNA G  W     + N+
Sbjct: 7   CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45


>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 107 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 193
           + C  C+ T    W+EG +     CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243


>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
           similar to PIR:T05288 from [Arabidopsis thaliana]
          Length = 303

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 25/95 (26%), Positives = 40/95 (42%)
 Frame = +2

Query: 113 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPYHEAMGLAPDLPEDLY 292
           C  C+ T    W+EG       CNA      C  + R+ +  P Y  A   +P     ++
Sbjct: 222 CTHCETTKTPQWREGPSGPKTLCNA------CGVRFRSGRLVPEYRPAS--SPTFIPAVH 273

Query: 293 YLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHR 397
                + + RK +E  RKD D +F   ++ + I R
Sbjct: 274 -----SNSHRKIIEMRRKD-DEQFDSSMIRAVISR 302


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 GTNLQTWKEGSHSLTNWCNAE 190
           GTN ++ KE   SLT+W  AE
Sbjct: 70  GTNNESMKETGQSLTSWVEAE 90


>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 227 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 132
           +YESY+G  M + QHY +   S+T L   V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339


>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
           similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
           [Methylovorus sp.]
          Length = 419

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 113 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 214
           C  C G  L   K+GS ++   CN +G    CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P46825 Kinesin light chain
           (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
           TPR Domain
          Length = 1797

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 26  HGSYARSW*GYLPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 205
           +G  A +W   +P  AA  P     + ++  R  G      ++GS+ L  W N   F  S
Sbjct: 278 YGFRANTW--LIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIAS 335

Query: 206 CPSK 217
            P K
Sbjct: 336 MPCK 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,455
Number of Sequences: 28952
Number of extensions: 214587
Number of successful extensions: 628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)