Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1454
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 34 0.017
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 31 0.12
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 31 0.21
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 29 0.65
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 2.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 2.0
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 27 2.0
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 26 4.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.0
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 25 8.0
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 8.0
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 8.0
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 8.0
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 8.0
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 25 8.0
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 76 NALTPMVMDSVDPSLAQTVSITWRKFPIKSLYLRAEPRVSTMLYVATRLSLN 231
N+ MVMD + PSL RKF +K++ L A+ +S + YV ++ L+
Sbjct: 78 NSYNAMVMDLLGPSLEDLFCYCGRKFTLKTVLLLADQLISRIEYVHSKSFLH 129
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 547 VHSEQGRHHDALHSPVAVASRARPKNRKRIMPTTNHNPPADQKNSVTSNF 398
VHS +G + + S V+ + N K IMPT N + ++ + S+F
Sbjct: 30 VHSPEGEEFENILSSVSATVEKKEVNNKLIMPTANRDNQGVREELLVSSF 79
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 91 MVMDSVDPSLAQTVSITWRKFPIKSLYLRAEPRVSTMLYVATRLSLN 231
MVMD + PSL + RKF +K++ L A+ +S + ++ ++ L+
Sbjct: 82 MVMDLLGPSLEDLFNFCNRKFSLKTVLLLADQLISRIEFIHSKSFLH 128
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 29.1 bits (62), Expect = 0.65
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 705 QTGNGLFRIAGHRFRKGTRFAKGDKCVYCHQAIDAFVTQGQKCIDCKELYHTKC 544
Q + + GH+F + +F + +C C + + G +CIDC H KC
Sbjct: 395 QRKESVHEVYGHKFLQH-QFYQIMRCALCGEFLKN--AAGMQCIDCHYTCHKKC 445
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = -1
Query: 582 KCIDCKELYHTKCIQ--NKGV 526
+CI C++ +H KC+Q NKG+
Sbjct: 140 QCILCEDWFHEKCLQKTNKGI 160
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -1
Query: 684 RIAGHRFRKGTRFAKGDKCVYCHQAIDAFVTQGQKCIDCKELYHTKCI 541
++ G K +G++C YC +D C C+ YHT C+
Sbjct: 253 QVNGSTSLKRPLIERGEQCEYC--GLDKNPETILLCDGCEAAYHTSCL 298
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 58 SSMNPLNALTPMV-MDSVDPSLAQTVSITWRKFPIKSLYLRAEPR 189
SSM+ TP + +D +DP + + + W+K K + R + R
Sbjct: 265 SSMDSTTPPTPSLSIDEIDPLVVDCMCVLWKKSSSKKVVRRLQQR 309
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 49 PINSSMNPLNALTPMVMDSVDPSLAQTVSITWRKFPIKSLYLRAEPRVSTMLY 207
P+ + + +LT + S P + QT+ ++ IK LY A PR+ Y
Sbjct: 224 PLEVARVEMQSLTKGIQHS-SPGIMQTIMSIYKNNGIKGLYRGAVPRMGLGAY 275
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 582 KCIDCKELYHTKCI 541
+C DCK+ YH C+
Sbjct: 276 QCADCKKYYHMDCV 289
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 91 MVMDSVDPSLAQTVSITWRKFPIKSLYLRAE 183
+V+D + PSL + + RKF +K++ + A+
Sbjct: 83 LVIDLLGPSLEDLLDLCGRKFSVKTVAMAAK 113
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 201 AVRRYQIVFEF*QSVLEYLSTSDCFLFSLFMSY 299
A Y IV E SVL+YLS C L+ + Y
Sbjct: 267 ATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMY 299
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 213 YQIVFEF*QSVLEYLSTSDCFLFSLFMSYIFSIMKFCMACNSVASDMILSVLSIN 377
Y VF+ ++ LS DCF F S + +KF M C +A D++ L +N
Sbjct: 857 YDNVFDIPYNI-PVLSPMDCFTSCHFDSDMSIDLKFSMNCLRLA-DVVFMKLCVN 909
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 630 CVYCHQAIDAFVTQGQKCIDCKELYHTKCIQN 535
C CH+ ++ V CKE Y TKCI N
Sbjct: 312 CDNCHKPVNCEVED-----TCKEAYCTKCIIN 338
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 415 SVTSNFNL--TGTSEFIDRTDKIISDATELQAMQNFIMEKIYDMNNENKKQSEVDRYSST 242
S+ SN + T T +F R + D + +A+ N E + K EV+ Y+S
Sbjct: 438 SIESNHTMETTNTLKFASRAQNLPQDIRQAEAVTNVQAELASLHSALEKNAQEVEYYASL 497
Query: 241 LC*NSKTIW*RRTASSRLEAQ 179
+ + + R T + LEA+
Sbjct: 498 VKQLTSDLEERDTYIAMLEAE 518
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Frame = -1
Query: 642 KGDKCVYCHQAIDAFVTQ----GQKCI----DCKELYHTKCIQN 535
K D C C D Q G C CK ++H CIQN
Sbjct: 20 KDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQN 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,441
Number of Sequences: 5004
Number of extensions: 54319
Number of successful extensions: 187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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