Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1454
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) 48 7e-06
SB_22391| Best HMM Match : C1_1 (HMM E-Value=3.6e-17) 43 2e-04
SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08) 31 1.2
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 30 1.6
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42) 30 1.6
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_57639| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 29 2.8
SB_21656| Best HMM Match : C2 (HMM E-Value=0.019) 29 3.7
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33) 29 4.9
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 29 4.9
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 28 6.4
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 28 6.4
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 8.5
SB_1898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
Length = 865
Score = 48.0 bits (109), Expect = 7e-06
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Frame = -2
Query: 347 RRYRITGHAEFHYGKNIRHE**EQKTVGGRQVFKHALLEFKDNLVATYSIV--ETRGSAL 174
R YR TG ++ HE ++ T+ VFK +L EF L++ YS V + +L
Sbjct: 507 RHYRATGKPVI---SDMNHEGRKRDTIVDG-VFKKSLQEFHAFLISEYSWVMNHDKSVSL 562
Query: 173 KYKDLIGNFLHVMETVCAREGSTLSIT--MGVNAFRGFMDEF 54
KY+D+ +F +++ +E + S MG NAF G +DEF
Sbjct: 563 KYEDMCSSFEEILKKTIKKERISASFPAIMGTNAFAGVLDEF 604
>SB_22391| Best HMM Match : C1_1 (HMM E-Value=3.6e-17)
Length = 103
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -1
Query: 684 RIAGHRFRKGTRFAKGDKCVYCHQAIDAFVTQGQKCIDCKELYHTKCIQN 535
R A H F + F K C YC++ + F+ QG KC +CK H KC +N
Sbjct: 44 RAAKHEFVEHN-FRKPQFCYYCNKLLKGFIKQGVKCKNCKMGVHHKCQEN 92
>SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)
Length = 335
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 91 MVMDSVDPSLAQTVSITWRKFPIKSLYLRAEPRVSTMLYVATR 219
+VM+ + PSL + RKF IK++ L A+ +S + YV ++
Sbjct: 43 LVMELLGPSLEDLFNFCNRKFSIKTVLLLADQTISRIEYVHSK 85
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = -3
Query: 700 RERTLPHRRTPVSQRHAFRERRQMRVLPPSDRRVRHAGPEMYRLQGALPHQVH-SEQGRH 524
R+R+ RR PVS R R++ V P P R + LP +V S + +
Sbjct: 278 RQRSNSPRRVPVSPRQRSNSPRRVPVSPRQRSNSPRRVPVSPRQRPNLPRRVPLSSRQQS 337
Query: 523 HDALHSPVAVASRARPKNRKRIMPTTNHNPPADQK 419
+ P++ ++RP R R + + P Q+
Sbjct: 338 NSPRRVPLSPRQQSRPVVRGRRYSQSPNRAPVSQR 372
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 184 PRVSTMLYVATRLSLNSSKACLNTCLPPTV-FCSHYSCRIF 303
PRV T L+ S++ CL+ C+ +V CSH R+F
Sbjct: 1299 PRVFTCLFACVYPSVSRVLTCLSACVHLSVRVCSHVCSRVF 1339
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 184 PRVSTMLYVATRLSLNSSKACLNTCLPPTVFCSHYSCRIFFP 309
PRV T LY LS+ C+ CLP C H S R+ P
Sbjct: 1151 PRVFTCLYACVNLSV-----CV--CLPVCFSCVHLSVRVLSP 1185
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 685 PHRRTPVSQRHAFRERRQMRVLPPSDRRVRHAGPEMYR-LQGALPHQVHSEQGRHHDA 515
PH T + + E Q + PPS V+ G ++Y L+GA+P + R +A
Sbjct: 852 PHSNTAMDPTLSKAEHFQSQSRPPSSASVQRLGEDLYMILKGAMPAENDGSSRRMREA 909
>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
Length = 952
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 633 KCVYCHQAIDAFVTQGQKCIDCKELYHTKCIQN 535
KC C ++ F Q KC +C + H KC N
Sbjct: 349 KCAVCLDSVH-FGRQSSKCAECDSVCHIKCCPN 380
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 630 CVYCHQAIDAFVTQGQKCIDCKELYHTKC 544
C +C Q + V QG KC C +H +C
Sbjct: 114 CDFCGQMLYGLVRQGLKCDGCGGNFHKRC 142
>SB_57639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 658 RHAFRERRQMRVLPPSDRRVRHAGPEMYRLQGALPHQVHS 539
R+ FR++ Q++ SDRR+ + R+Q + PH + S
Sbjct: 65 RNRFRDKIQLKYGSTSDRRICGLQAVILRIQNSCPHAIFS 104
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 410 HFELQSHRHFGIYRQNRQNHIRRYRITGHAEFHYGKNIRH 291
H+ + H HF YR R +H YR+ H FHY + +RH
Sbjct: 1069 HYRVLRHHHFH-YRVLR-HHPFHYRVLRHHPFHY-RVLRH 1105
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 410 HFELQSHRHFGIYRQNRQNHIRRYRITGHAEFHYGKNIRH 291
H+ + H F YR R +H YR+ H FHY + +RH
Sbjct: 1059 HYRVLRHHPFH-YRVLRHHHFH-YRVLRHHPFHY-RVLRH 1095
>SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)
Length = 792
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 42 VLTHKFIHEPSECVDPHGDGQRGPFPGADRLHHVEEVPDQIFVLKS 179
VLT H P P RGP P LH V+ + ++F L S
Sbjct: 245 VLTESSSHNPQVVTKP--PLPRGPSPHVRELHQVDPITSEMFTLHS 288
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 407 FELQSHRHFGIYRQNRQNHIRRYRITGHAEFHYGKNIRH 291
F+ +H Y+ N+++H RR + F + KN RH
Sbjct: 556 FDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSKNRRH 594
>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
Length = 834
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 76 NALTPMVMDSVDPSLAQTVSITWRKFPIKSLYLRAEPRVSTMLYV 210
N +VMD + PSL + RKF +K++ + A+ ++ + YV
Sbjct: 80 NDYNVLVMDLLGPSLEDLFNFCNRKFNMKTVLMLADQMIARIEYV 124
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 630 CVYCHQAIDAFVTQGQKCI-DCKELYHTKC 544
C+YCHQ D F C CK+ +T C
Sbjct: 23 CLYCHQETDCFGVYPHCCDGHCKKTCNTSC 52
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 553 HQVHSEQGRHHDALHSPVAVASRARPK 473
H+VHS+ GRH + +PV+ SR K
Sbjct: 751 HEVHSKYGRHLTGIGNPVSPHSRMTEK 777
>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1214
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 535 QGRHHDALHSPVAVASRARPKNRKRIMPTT-NHNPPADQKNSVTSNFNL 392
Q R H P + S+A P ++R PTT + P QK S + L
Sbjct: 1163 QKRSRSPNHEPRSKRSKANPSAQQRASPTTSDEEPETSQKASSSRQMTL 1211
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 451 TTNHNPPADQKNSVTSNFNLTGTSEFID 368
T N PP DQ TSN N+ SE D
Sbjct: 618 TGNPQPPCDQAEHYTSNTNIDDNSEQFD 645
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/66 (30%), Positives = 25/66 (37%)
Frame = -1
Query: 522 TMPCTAPSLSPPERDRRTESASCXXXXXXXXPIKRIQSLRTSISPALRNLSTEPTKSYPT 343
T P T+P SP + + S R S RTS+ R+L T P S T
Sbjct: 136 TSPKTSPKSSPKTSPKTSSKTSLKTSQKTSLNASRKTSRRTSLK---RSLKTSPKTSRKT 192
Query: 342 LPNYRP 325
P P
Sbjct: 193 SPKTSP 198
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -2
Query: 227 KDNLVATYSIVET--RGSALKYKDLIGNFLHVM-----ETVCAREGSTLSITMGVNAFRG 69
K V+T+ + T R S +++ +GNFL + T C G+TL T ++ RG
Sbjct: 9 KRTTVSTHILAATPRRQSGTSFEERLGNFLQTVCVNLRFTACHVNGTTLKATFSMSGIRG 68
>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 574 RLQGALPHQVHSEQGRHH-DALHSPVAVASRARPKNR 467
+L G L HQ+ ++ G+HH AL P+ VAS++ R
Sbjct: 465 QLVGRLIHQLLTDIGKHHPQALIYPLTVASKSASSAR 501
>SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 583 EMYRLQGALPHQVHSEQGRHHDALHSPVAVASRARPKNRK 464
EM+ GA P+Q + + ++ P +AS+AR ++RK
Sbjct: 1051 EMFEYGGARPYQEIEDAQQEGHRVYGPDGIASQARCQDRK 1090
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = -3
Query: 493 ASRARPKNRKRIMPTTNHNPPADQKNSVTSNFNLTGTSEFIDRT------DKIISDATEL 332
+ R+ P R T P + V + +L G +F D+ D+++S +
Sbjct: 1111 SQRSLPLWRDTSPITVYRKPEGSESEYVATLKHLAGDCKFSDKVRSERLRDRLVSGIRDD 1170
Query: 331 QAMQNFIMEKIYDMNNEN 278
+ ++ + EK+ D+N EN
Sbjct: 1171 KMLRELLREKLVDLNFEN 1188
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -2
Query: 410 HFELQSHRHFGIYRQNRQNHIRRYRITGHAEFHYGKNIRH 291
H + H H + R H R+R H H+ N RH
Sbjct: 312 HHHHRHHHHHHHHHHQRHRHRHRHRHRHHHHHHHEYNRRH 351
>SB_1898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 63 HEPSECVDPHGDGQRGPFPGADRLHHVEEVPDQ 161
H+PS C HG+ + P +D L +++VP Q
Sbjct: 88 HQPSGC-GVHGNDESSERPESDALEQLQDVPAQ 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,455,111
Number of Sequences: 59808
Number of extensions: 450867
Number of successful extensions: 1914
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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