Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1454
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    23   3.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   3.7  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   3.7  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   3.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.6  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 216 GSDVQHRRDSRLSS*VQRFDRELPPRDGDGL 124
           G +    + SR    V+ FD E+P   GD L
Sbjct: 143 GKNETSTQSSRSVESVEDFDNEIPKNQGDVL 173


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 216 GSDVQHRRDSRLSS*VQRFDRELPPRDGDGL 124
           G +    + SR    V+ FD E+P   GD L
Sbjct: 191 GKNETSTQSSRSVESVEDFDNEIPKNQGDVL 221


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 216 GSDVQHRRDSRLSS*VQRFDRELPPRDGDGL 124
           G +    + SR    V+ FD E+P   GD L
Sbjct: 191 GKNETSTQSSRSVESVEDFDNEIPKNQGDVL 221


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 216 GSDVQHRRDSRLSS*VQRFDRELPPRDGDGL 124
           G +    + SR    V+ FD E+P   GD L
Sbjct: 191 GKNETSTQSSRSVESVEDFDNEIPKNQGDVL 221


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 291 MSYIFSIMKFCMACNSVA 344
           M Y+F+++  C+  NSVA
Sbjct: 214 MFYVFNLILPCILINSVA 231


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 622 LPPSDRRVRHAGPEMYRLQGALPHQVH 542
           LPPS    +H   + +  +G+ PH  H
Sbjct: 312 LPPSYHPHQHHPSQYHPHRGSSPHHQH 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,135
Number of Sequences: 438
Number of extensions: 4124
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)