Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1454
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 32 0.32
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 32 0.32
At4g01350.1 68417.m00175 DC1 domain-containing protein contains ... 32 0.43
At2g39110.1 68415.m04805 protein kinase, putative similar to pro... 31 0.56
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ... 31 0.56
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 31 0.74
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 31 0.74
At3g27480.1 68416.m03436 DC1 domain-containing protein contains ... 31 0.98
At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At1g37015.1 68414.m04615 hypothetical protein 30 1.3
At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1) ... 30 1.7
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 30 1.7
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 30 1.7
At4g06716.1 68417.m01092 hypothetical protein 29 2.3
At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing ... 29 2.3
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 29 4.0
At5g41310.1 68418.m05020 kinesin motor protein-related 28 5.2
At3g09830.2 68416.m01173 protein kinase, putative similar to pro... 28 5.2
At3g09830.1 68416.m01172 protein kinase, putative similar to pro... 28 5.2
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 28 5.2
At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase... 28 6.9
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 28 6.9
At2g19470.1 68415.m02276 casein kinase, putative similar to case... 28 6.9
At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1 [Ar... 28 6.9
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 27 9.2
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ... 27 9.2
At2g21960.1 68415.m02609 expressed protein 27 9.2
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 27 9.2
At1g28240.1 68414.m03466 expressed protein 27 9.2
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Frame = -3
Query: 619 PPSDRRVRHAGPEMYRLQGALP-------HQVHSEQGRHHDALHSPVAVASRARPKNRKR 461
PPS + + P M LQGALP VH++ P A+ R P
Sbjct: 494 PPSQTQTENMFPSMAPLQGALPPSGMMPSQGVHNQFNIPSQGSAHPSAMPPRYMPSQIPG 553
Query: 460 IMPTTNHNPPADQKNS 413
MP +N NP D S
Sbjct: 554 SMPPSNVNPIGDINTS 569
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Frame = -3
Query: 619 PPSDRRVRHAGPEMYRLQGALP-------HQVHSEQGRHHDALHSPVAVASRARPKNRKR 461
PPS + + P M LQGALP VH++ P A+ R P
Sbjct: 494 PPSQTQTENMFPSMAPLQGALPPSGMMPSQGVHNQFNIPSQGSAHPSAMPPRYMPSQIPG 553
Query: 460 IMPTTNHNPPADQKNS 413
MP +N NP D S
Sbjct: 554 SMPPSNVNPIGDINTS 569
>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -1
Query: 642 KGDKCVYCHQAIDAFVTQGQKCIDCKELYHTKCIQNKGVITMPC 511
K ++ V C D+ C++C +H CIQ + PC
Sbjct: 131 KREEKVSCELCKDSIAGPSYSCLECDVYFHVNCIQLSKEVNHPC 174
>At2g39110.1 68415.m04805 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 435
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 478 VALWRRQRRGCAGHRDDALVLNALGVVE---LLAVDTFLALRDERVDRLVAVHAFVAFRE 648
+A+ + RRG GH++ +N LGVVE L+ + + A DER + + V+ +V R
Sbjct: 121 IAVKQLSRRGLQGHKEWVTEVNVLGVVEHPNLVKLIGYCAEDDERGIQRLLVYEYVQNRS 180
Query: 649 TR 654
+
Sbjct: 181 VQ 182
>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 772
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -1
Query: 672 HRFRKGTRFAKGDKCVYCHQAIDAFVTQGQKCIDCKELYHTKCIQ 538
+R + F + D+C C ++I + CI C ++H +C++
Sbjct: 242 YRTKSHISFTENDQCQICRRSIVISLDSFFYCIQCSMVFHFECLE 286
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 31.1 bits (67), Expect = 0.74
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 630 CVYCHQAIDAFVTQGQKCIDCKELYHTKCI 541
C+ CH+ + + + C++C+ +YH +CI
Sbjct: 532 CIICHERV---LGKAVSCMECETIYHLRCI 558
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 31.1 bits (67), Expect = 0.74
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = -3
Query: 472 NRKRIMPTTNHNPPADQKNSVTSNFNLTGTSEFIDRTDKIISDATELQAMQNFIMEKIYD 293
NRK N + +K N + G +EF+ + DK + D + +N MEK +
Sbjct: 197 NRKSRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVID---MLVKKNAEMEKKKE 253
Query: 292 MNNENKKQSEVDR 254
E KK+ E +R
Sbjct: 254 EERERKKKMEKER 266
>At3g27480.1 68416.m03436 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 604
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 636 DKCVYCHQAIDAFVTQGQKCIDCKELYHTKC 544
D+C +CH+ I ++G +C+ C + HT+C
Sbjct: 135 DRCSFCHK-IGNEDSKGYRCLRCGLVIHTRC 164
>At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -1
Query: 669 RFRKGTRFAK---GDKCVYCHQAIDAFVTQGQKCIDCKELYHTKCIQNKGVITMPC 511
+++ G+ F++ G++CV C + + + Q + CK +YH++CI I C
Sbjct: 181 KYKFGSIFSRKRAGERCVICQ--LKYKIGERQMNLPCKHVYHSECISKWLSINKVC 234
>At1g37015.1 68414.m04615 hypothetical protein
Length = 126
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = -3
Query: 580 MYRLQGALPHQVHSEQGRHHDALHSPVAVASRARPKNRKRIMPTTNHNPPADQKNSVTSN 401
+YR GALP Q+ Q R L+ + + R P R P H+ D K V
Sbjct: 53 LYRSLGALPGQITLSQPRRSKQLNFTQSRSRRNHPIRTTRSHPHDIHSIALDHK--VAGP 110
Query: 400 FNLTGTS 380
FNL T+
Sbjct: 111 FNLDFTA 117
>At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1)
identical to delta-8 sphingolipid desaturase GI:3819710
from [Arabidopsis thaliana]; contains Pfam profile
PF00487: Fatty acid desaturase; contains Pfam profile
PF00173: Heme/Steroid binding domain
Length = 449
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 590 CVTNASIAWWQYTH 631
C+T SIAWW++TH
Sbjct: 184 CLTGISIAWWKWTH 197
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 590 CVTNASIAWWQYTH 631
C+T SIAWW++TH
Sbjct: 184 CLTGISIAWWKWTH 197
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -3
Query: 589 GPEMYRLQGAL----PHQVHSEQGRHHDALHSPVAVASRARPKNRKRIMPTTNHNPPADQ 422
GP + LQ + PH H+ +H ++L P ++R RP R T N N P Q
Sbjct: 177 GPNPHLLQHSTSAPNPHTHHAGHPQHQNSLPVPNQGSNRVRPMPMTRPNRTINPNRPIAQ 236
Query: 421 KNSV 410
+V
Sbjct: 237 NAAV 240
>At4g06716.1 68417.m01092 hypothetical protein
Length = 87
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = -3
Query: 580 MYRLQGALPHQVHSEQGRHHDALHSPVAVASRARPKNRKRIMPTTNHNPPADQKNSVTSN 401
+YR GALP Q+ Q R L + + R P R P H+ D K V
Sbjct: 14 LYRSLGALPGQITLSQPRRSKQLSFTQSRSRRNHPIETTRSHPHDIHSIALDHK--VAGP 71
Query: 400 FNLTGTS 380
FNL T+
Sbjct: 72 FNLDFTA 78
>At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 236
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 578 HFWPCVTNASIAWWQYTHLSPFAKRVPLRNRCPAMR 685
H PC I W + H+ A++ RCPA R
Sbjct: 22 HLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACR 57
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 627 VYCHQAIDAFVTQGQKCIDCKELYHTKCIQ 538
+ C + F + C+ C+++YH CIQ
Sbjct: 536 ITCSICDEKFCGKAFSCVTCEDIYHPMCIQ 565
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 433 PADQKNSVTSNFNLTGTSEFIDRTDKIISDATELQAMQNFIMEKIYDM 290
PAD V SNFN G S+FI+ ++ I+ T ++QN ++DM
Sbjct: 147 PADHSKGVDSNFN-DGGSQFIEASE--IN--TSHHSLQNTSTRSLFDM 189
>At3g09830.2 68416.m01173 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 418
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 478 VALWRRQRRGCAGHRDDALVLNALGVVE---LLAVDTFLALRDERVDRLVAVHAFVAFRE 648
VA+ + +RG GH++ +N LG+VE L+ + + A DER + + V+ ++ R
Sbjct: 115 VAVKQLGKRGLQGHKEWVTEVNFLGIVEHTNLVKLLGYCAEDDERGIQRLLVYEYMPNRS 174
Query: 649 TRAFAKPVS 675
P S
Sbjct: 175 VEFHLSPRS 183
>At3g09830.1 68416.m01172 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 418
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 478 VALWRRQRRGCAGHRDDALVLNALGVVE---LLAVDTFLALRDERVDRLVAVHAFVAFRE 648
VA+ + +RG GH++ +N LG+VE L+ + + A DER + + V+ ++ R
Sbjct: 115 VAVKQLGKRGLQGHKEWVTEVNFLGIVEHTNLVKLLGYCAEDDERGIQRLLVYEYMPNRS 174
Query: 649 TRAFAKPVS 675
P S
Sbjct: 175 VEFHLSPRS 183
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 579 CIDCKELYHTKCIQNKGVITMP 514
C+ C E YH +C+++ IT P
Sbjct: 18 CVTCDERYHKECVESPLEITYP 39
>At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 GP|5669846,
PG2 GI:5669848 from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 435
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/100 (25%), Positives = 36/100 (36%)
Frame = -1
Query: 621 CHQAIDAFVTQGQKCIDCKELYHTKCIQNKGVITMPCTAPSLSPPERDRRTESASCXXXX 442
CH A I+ K Y + ++ ++PCT SLS E T AS
Sbjct: 340 CHNETSAVAVSNINYINIKGTYTKEPVRFACSDSLPCTGISLSTIELKPATGKASSLDPF 399
Query: 441 XXXXPIKRIQSLRTSISPALRNLSTEPTKSYPTLPNYRPC 322
K L+T P ++ L TE + + N C
Sbjct: 400 CW----KAHGELKTKTLPPIQCLKTEKSPEAASRSNNDAC 435
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -3
Query: 619 PPSDRRVRHAGPEMYRLQGALPHQVHSEQGRHHDALHSPVAVASRARPKNR 467
P S H+GP R Q + H H + HH HS R NR
Sbjct: 490 PGSQSSRHHSGPSPSRWQPSHQHHHHHQHLHHHHQNHSYEPAPPRHGRANR 540
>At2g19470.1 68415.m02276 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158; contains protein kinase domain,
Pfam:PF00069
Length = 433
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +1
Query: 91 MVMDSVDPSLAQTVSITWRKFPIKSLYLRAEPRVSTMLYVATRLSLN 231
+VMD + PSL S R+F +K++ + A+ ++ + ++ ++ L+
Sbjct: 80 LVMDLLGPSLEDLFSYCKRQFSLKTVLMLADQMINRLEFIHSKSYLH 126
>At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1
[Arabidopsis thaliana] GI:15487382; contains Pfam
profile PF00168: C2 domain
Length = 589
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 403 NFNLTGTSEFIDRTDKIISDATEL---QAMQNFIMEKI-YDMNNENKKQSEVDRY 251
+FN +G E I +T+K +++ L + NF+ + + N K Q VDRY
Sbjct: 276 DFNTSGNHELIGKTEKSVAELERLCLQKEAANFVYPSLSHGRNKVLKGQLIVDRY 330
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 587 PCVTNASIAWWQYTHLSPFAKRVPLRNRCPAMR 685
PC I W + H+ A++ RCPA R
Sbjct: 25 PCKCGYQICVWCWHHIMDMAEKDQSEGRCPACR 57
>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 687 FRIAGHRFRKGTRFAKGDKCVYCHQAIDAFVTQGQKCIDCKELYHTKC 544
FR+ GH R + GD + C A D G C +CK H KC
Sbjct: 3 FRLEGHEHRVSI-VSSGDS-LEC-DACDRSSGDGFSCSECKFTVHRKC 47
>At2g21960.1 68415.m02609 expressed protein
Length = 332
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 361 DKIISDATELQAMQNFIMEKIYDMNNENKKQSE--VDRYSSTLC*NSKTI 218
DK+I + +L ++Q FI ++NE ++ YS++L N+KTI
Sbjct: 258 DKVIGQSADLFSLQRFINRSQPKISNEQQQNLTRWAVLYSASLLKNNKTI 307
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 600 FVTQGQKCIDCKELYHTKCIQNKGVITMP 514
F T C+ C +YH +C+Q+ I P
Sbjct: 119 FGTDYYLCVHCDSIYHKECVQSPFKIEHP 147
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 516 PCTAPSLSPPERDR-RTESASCXXXXXXXXPIKRIQSLRTSISPALRNLS 370
PC + +L PP DR RT C + S SP L+NL+
Sbjct: 147 PCNSFTLPPPPADRKRTGPRPCPVCYLPVEEAVALMPNAPSFSPVLKNLT 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,434
Number of Sequences: 28952
Number of extensions: 297695
Number of successful extensions: 1167
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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