Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1452
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   1.1  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   7.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +3

Query: 273 DQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTM-TN---SPKSQ 440
           DQ   PS R   +  +N   S+P    PT P   +LK+   +  P   + TN   S K Q
Sbjct: 415 DQRSTPSPRVYGNVNENQDCSTPTENSPTKPYY-KLKTANNKRPPSTELGTNIYTSSKRQ 473

Query: 441 RLT--LTPKTS 467
           R +  L+P +S
Sbjct: 474 RTSPQLSPMSS 484


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 644 CWIVYTKIY 618
           CWI+Y +IY
Sbjct: 58  CWIIYVRIY 66


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 252 VPHSLSFDQS-PGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNS 428
           VP S+S  Q  P       ++   +S  S  +   P +P+I+  K P   ++ L    ++
Sbjct: 42  VPLSISTGQRLPANFSFGQVNSPPSSTSSGSLGQFPATPVIDPAKDPAIYSNLLPRPGSN 101

Query: 429 PKSQRLTLTPKTSQETPKIR 488
             S    +    + ET K++
Sbjct: 102 DNSWESLIEVTKTSETSKLQ 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,391
Number of Sequences: 336
Number of extensions: 3648
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)