Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1452
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    31   0.17 
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    29   0.51 
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    29   0.68 
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    28   1.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   1.6  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    28   1.6  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   2.7  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    27   2.7  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    27   2.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.7  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    27   2.7  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   3.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   3.6  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   4.8  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   4.8  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.3  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 390 ETRNSPLKTMTNSPKSQRLTLTPKTSQETPKI 485
           ET +SP  T+++SP  + + L+P  +Q+ PKI
Sbjct: 600 ETDSSPSDTISSSPTVRAVNLSPSKNQKPPKI 631


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 410 KNHDKLTKIPEINSHSENFTRNTKNQTYASHTQVRSPLSYEIAENILDRPSPLTSRSLRG 589
           KN+  L  +   +S  +N T  T+N  + S   VR P +Y   + +  + +PL  +    
Sbjct: 320 KNYLGLNVVQNDDSRKKNSTLQTQNMRFKSSYGVRGPRNYSSFDALPSKNAPLVRQEQSA 379

Query: 590 TLK 598
           + K
Sbjct: 380 SKK 382


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 291 SKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQ 470
           +KR+   ++   +  + IN    +P+++   S    +SPL T ++S      T +P   +
Sbjct: 518 TKRKDYEELPEEVSETSINIAEHTPVLKHTSSLLDHHSPLAT-SSSEHEMEATPSPALLK 576

Query: 471 ETPKIRHTP 497
           +T K R  P
Sbjct: 577 KTNKRRELP 585


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 398 KLTSK-NHDKLTKIPEINSHSENFTRNTKNQTYASHTQVRSPLSYEIAENILDRPSPLTS 574
           KLT K     L     +NS   +FTR  KN T +S T  R     +  ++  D+ SP ++
Sbjct: 4   KLTKKLKETHLASAIGLNSGGSSFTRGLKNSTLSS-TSSRKSSDEKSRKSSEDKRSPQST 62

Query: 575 RSLRGTLKIKEVLEDRS 625
               G L++  ++E R+
Sbjct: 63  VVQPGLLQV-TIIEARN 78


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 357 TSPLIERLKSP--ETRNSPL-KTMTNSPKSQRLTLTPKTSQETPKIRHTPVTP 506
           T+P++E    P  ET  +P+ +T T +P  +  T+TP        +  T  TP
Sbjct: 92  TTPMVETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTP 144


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +2

Query: 353 TYFTSDRKIKVTRDQKLTSKNHDKLTKI--PEINSHSENFTRNTKNQTYASHTQVRSPLS 526
           ++ T+      +++ K T +  D  ++   P  N  SEN     K  T +       P+ 
Sbjct: 288 SFSTTMASADASKETKQTHETKDSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPDKPIK 347

Query: 527 YEIAENILDRPSPLTSRSLRGTLKIK 604
           ++  E      +PL+S+ L  +  +K
Sbjct: 348 FDTPEKKFTFTNPLSSKKLPASSDVK 373


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 472 SCEVFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRGEVGL 350
           S E++GV ++ W F E  +  RG +  S D  +S +G  GL
Sbjct: 335 SGEIYGVLLHRWCFLEIFIKLRGAY-PSNDSGISGKGIFGL 374


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 588 PLRLRLVRGEGLSRMFSAISYDSGDLTW 505
           P R+  VR  G ++ F A+  DSG+ +W
Sbjct: 40  PKRIHEVRVRGGNKKFRALRLDSGNFSW 67


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 588 PLRLRLVRGEGLSRMFSAISYDSGDLTW 505
           P R+  VR  G ++ F A+  DSG+ +W
Sbjct: 40  PKRIHEVRVRGGNKKFRALRLDSGNFSW 67


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 426 SPKSQRLTLTPKTSQETPKIRHTPVTPK*DHRYHMK*LRTFWIGLHPLLV 575
           S    RL+LTP ++  TP    +   P      + K L+ FW+  + L +
Sbjct: 407 SVAKDRLSLTPSSTPSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSI 456


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 435 ILVSLSWFLEVSFWSLVTLIFLSE 364
           +L+   W L V FW++V  IF+ E
Sbjct: 69  LLIGAVWGLNVGFWTVVCGIFIGE 92


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 212 LRFVALLPEFILKFSV 165
           L++ ALLPE++ KFS+
Sbjct: 236 LKYAALLPEYVAKFSI 251


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +2

Query: 347 LQTYFTSDRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFT--RNTKNQTYASHTQVRSP 520
           LQ YFT+    +  ++Q   SKN D   KI   + H   F+  +  K  +  S   +R+ 
Sbjct: 371 LQRYFTALEMQQDQKEQHKKSKNKDPFRKITHPSLHLGKFSTPKLIKRMSLRSKKSLRND 430

Query: 521 LSYEIAENILDRPSPLTSRSLRGTLKIKE 607
              +   N   R S  ++ S       KE
Sbjct: 431 SKSDDVGNSTHRFSTASAASTSAVKTEKE 459


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 339 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 476
           P + KP++     + + E RN+ +    NSP S   + + K++  T
Sbjct: 129 PTDNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATT 174


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 300 RILSDIQNSILSSPINYKPTSPLIERLKSPETR 398
           ++LS+I   I  +   Y    P + +LKSPET+
Sbjct: 276 KVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK 308


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 514 SYLGVTGVCLIFGVSCEVFGVRVNLWDFGE 425
           +YLG+TG+        E+F  +VNL+ F E
Sbjct: 49  TYLGLTGLATDVQTLYELFRYKVNLYKFRE 78


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 317 TKLYTQLTN*LQTYFTSDRKIKVTRDQKLTSKNHDKLTKI 436
           TK YT + + L T+   D +   T  +KLTSK   +L K+
Sbjct: 210 TKNYTHIFDSLLTFTRHDSEDVSTSVEKLTSKKISELEKL 249


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +3

Query: 273 DQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERL----KSPETRNSPLKTMTNSPKSQ 440
           D S   ++ R+L+    + L +   +K  S LI +L    + PE+RN  LK +  S K  
Sbjct: 360 DNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLFFSEKDN 419

Query: 441 RLTLTPKTSQETPKIRHTPVT 503
            LT   +     P   H  +T
Sbjct: 420 VLTYILQDQAVGPSFIHKVIT 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,229
Number of Sequences: 5004
Number of extensions: 61404
Number of successful extensions: 261
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)