Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1452
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 31 1.2
06_01_0029 - 288676-289287,289441-289733,289842-290031 29 3.8
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 29 3.8
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.0
04_03_0904 + 20717005-20718087 29 5.0
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148... 28 6.6
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 6.6
05_03_0051 + 7813903-7814077,7814192-7814302,7815028-7815317 28 6.6
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 28 6.6
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241... 28 8.7
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 8.7
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 321 NSILSS--PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHT 494
NS+ S P + P +P R+ +P R+ P K + P T+Q TP++ H
Sbjct: 294 NSVSSPLLPFHQLPGAP--PRISAPSARHFPEYDWCPLEKPR-----PATAQSTPRLAHM 346
Query: 495 PVTP 506
PVTP
Sbjct: 347 PVTP 350
>06_01_0029 - 288676-289287,289441-289733,289842-290031
Length = 364
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 163 ITENFRINSGNNATKRKQEEAFSHNYKKKMYPTRLASTKVLAPRSAGSSQTYKTLYSAHQ 342
+ E RIN G+ A ++ + FSH K K YPT + + A ++ K +Y+ Q
Sbjct: 62 LQERCRINGGSAAEEQNEWYFFSH--KDKKYPTGTRTNRATAAGFWKATGRDKPIYATKQ 119
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 339 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 476
P+N +P +I++ P+ + S ++ P+S ++ +PK+SQ T
Sbjct: 267 PLNPRPREQVIQQNHEPQAQKSVRLQSSSGPESHKVQ-SPKSSQRT 311
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 487 LIFGVSCEVFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRG 362
L+ ++ N DF + + + + E+L+ DF+L +RG
Sbjct: 1156 LLLRYGSQLMAASENQLDFPKIISLLKKEYLLKDDFSLKVRG 1197
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +3
Query: 339 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHTPVTP 506
P YKP P + P+ + +P T PK TP T + PK TP TP
Sbjct: 239 PPTYKPAPPTYK----PQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTP-TP 289
>09_04_0117 +
14813472-14814113,14814194-14814404,14814552-14814846,
14815059-14815448,14815528-14815605,14815692-14815926
Length = 616
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 596 KIKEVLEDRSWYKRSNKENCEPMMAETFMKFDNEEDARD 712
K+KE+ E W KR N E+C E+ ++ + +A D
Sbjct: 343 KVKEIGEMAIWRKRLNTESCPSRQDESSVQMCDSTNADD 381
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 288 PSKRRILSDIQNSILSSPI---NYKPTSPLIERLKSPETR--NSPLKTMTNSPKSQRLTL 452
P+ R +++D+Q SI + P +PT+P L +P P + + +P +Q++ +
Sbjct: 146 PNYRSLITDVQPSIQAVPSVAPTTQPTTPTSTPLPAPSAMAPGQPQQPIQQTPPTQQV-V 204
Query: 453 TPKTSQETPKIRHTP 497
P Q ++ TP
Sbjct: 205 QPIQQQVMQPVQQTP 219
>05_03_0051 + 7813903-7814077,7814192-7814302,7815028-7815317
Length = 191
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 106 KMWGESSENCENNCQCSGLITENFRINSGNNATKRKQEEAFSHNYKKKMYPTRLASTKVL 285
K++ + +N NN SGL+ N++ + A+ + + +K++P +AS V+
Sbjct: 28 KVFTLALDNASNNTSASGLLQSNYKHDLLFEASTPSHLQVLNWITSEKIFPQNMASLSVV 87
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 LEAQDPLRHTKLYTQLTN*LQTYFTSDRKIKVTR-DQKLTSKNHDKLTKIPEINSHSENF 466
LE + LR Q+ + LQ + S+ +++ D+ L S ++K+P+ S+S+N
Sbjct: 466 LETESLLRLEDHKQQIESMLQRFKMSNFFVRIAESDEPLWSNKKLAVSKVPKEQSYSDNQ 525
Query: 467 TRNTKNQTYASHT 505
N +++ A +T
Sbjct: 526 ENNKGSRSNAYNT 538
>06_01_0335 +
2412766-2415655,2416108-2416208,2416871-2416895,
2416977-2417049,2417191-2417373,2418164-2418227,
2418427-2418447,2418862-2418905,2420575-2420650,
2421359-2421373
Length = 1163
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 368 DRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFTRNTKNQTYASHTQVRS 517
D I ++R++K + DK T + E N H F + ++ QVRS
Sbjct: 466 DIMISISREEKFVCRIDDKETCLMEENIHHVAFYNSNSSEIAMDLNQVRS 515
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 431 KIPEINSHSENFTRNTKNQTYASHTQVRSPLSYEIAENILDRPSPLTSRSLRGTLKIKE- 607
K + H+EN T +A +V SP+ + + D SP+ + SL TLK +E
Sbjct: 3951 KATKSEDHNENNTEEEDKMVFA---EVESPVKIDDEMVLADVESPMKNVSLE-TLKTEEN 4006
Query: 608 -VLEDRSWYKRSNKENCEPMMAE 673
+LED +++ E+ + + AE
Sbjct: 4007 IMLEDER--EKNTSEHTDLIRAE 4027
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,095
Number of Sequences: 37544
Number of extensions: 348076
Number of successful extensions: 1068
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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