Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1451
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 75 1e-14
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 33 0.042
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 33 0.055
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 28 1.2
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 28 1.6
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 28 1.6
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 28 1.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 28 1.6
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 2.7
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 3.6
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 3.6
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 4.8
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 6.3
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 6.3
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 6.3
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 8.3
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 74.5 bits (175), Expect = 1e-14
Identities = 32/78 (41%), Positives = 50/78 (64%)
Frame = +2
Query: 251 QITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF 430
++++YNLK N S T FE+H N + + ++P LL+V E+G + + VLH + F
Sbjct: 36 RVSVYNLKDNTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNF 95
Query: 431 KQQVNAVKFSPDGKYFAV 484
K V A++FSP+GK+FAV
Sbjct: 96 KSPVGAIEFSPNGKFFAV 113
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 147 MKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNR 254
MK + F NL+GT++ KG+++F+ DG ++SPVGNR
Sbjct: 1 MKTEFGFSNLVGTIFSKGNLVFTPDGFSILSPVGNR 36
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 535 EYRPFIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVEYLE 678
E+ PF++ R + D++ + WS SR SKD T ++H+V+ +E
Sbjct: 132 EFAPFVLHREYTGHFDDIVSISWSADSRFFISTSKDLTARLHSVDPIE 179
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 33.1 bits (72), Expect = 0.042
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 305 SHYNYT----AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK 472
SHY +T AV I+P+G + G + L S L+ + K +NA+ FSP+
Sbjct: 187 SHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRY 246
Query: 473 YFAVCCDNTV 502
+ +++
Sbjct: 247 WLCAATGSSI 256
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 32.7 bits (71), Expect = 0.055
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +2
Query: 320 TAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYF-AVCCDN 496
T V +P+G + A + +I + + ++V + ++ V +V FSPDGKY + DN
Sbjct: 421 TTVMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDN 480
Query: 497 TVFV*QHRYISPANTGPS 550
T+ + + + +S N PS
Sbjct: 481 TIKLWELQCVS--NVAPS 496
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 410 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 508
+LH + + V+FS DGK+ A C+ V
Sbjct: 280 LLHTLEHTSVICYVRFSADGKFLATGCNRAAMV 312
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 440 VNAVKFSPDGKYFA 481
V +V FSPDGKY A
Sbjct: 337 VRSVAFSPDGKYLA 350
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 580 DEVTCLDW-SXCSRLLSVGSKDTTTKI 657
D+V+CLDW S +L GS D T KI
Sbjct: 298 DKVSCLDWYSKAPSVLLSGSYDKTAKI 324
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 428 FKQQVNAVKFSPDGKYFAV-CCDNTVFV 508
F V AVK SPDG++ A DNTV V
Sbjct: 533 FTDDVLAVKISPDGRFVAASLLDNTVKV 560
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 562 VFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHT 663
VF +TC+ WS + +++G KD I++
Sbjct: 359 VFHSYFAGLTCVTWSPDGKFIAIGGKDDLVSIYS 392
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 335 APNGMTLLAVTEKGEAQIISLTTSVVLHKY-KFKQQVNAVKFSPDGKYFAV 484
+P+ L V+E+G ++ VL + + + V +SPDGK+ A+
Sbjct: 331 SPDYQYLALVSERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGKFIAI 381
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 438 CCLNLYLCNTTEVVRLIICASPFSVTA 358
CCLN +LC + ++ +C + ++TA
Sbjct: 70 CCLNGWLCESNNILVCDVCRNKINLTA 96
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 48 FHDEYGVILYAVVSNIKSKFNRIIT*LRSTLVTMKFNYK 164
FH E GVI+ V S+ + +FN+ + TL T FN K
Sbjct: 1262 FHPEQGVIVAHVTSHPRLRFNQFL----GTLSTFGFNTK 1296
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 440 VNAVKFSPDGKYFAVCCDNTVFV*QHR 520
V +V+FSP+G+Y A D+ V + H+
Sbjct: 77 VTSVRFSPNGQYLASGSDDRVVIIWHK 103
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 401 TSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 508
T +VL K + + + A+ P G Y ++ +T+F+
Sbjct: 629 TKLVLSKEQMPRTLKAIALDPQGNYVSLFSKDTLFI 664
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 471 NTLPCAAIIQYSCDSTGTYHRRIPALHHETCLQESPRRSDVSGLVXLLETPVGRIERHDN 650
+T P II+Y ++ G ++ + LH L + D G L G + R
Sbjct: 179 DTTPLFPIIKYDSENNGLMYKPMIVLHSNEFLLITGSPKDAIG---LFVDSQGNVTRSTL 235
Query: 651 EDSH--RRIFREHHYVFRSADTXIKL 722
S + +F HYVF + + +++
Sbjct: 236 TFSFYPKHVFSTSHYVFAISSSSLQI 261
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 9 HIVVLSLFMNRTQFHDEYGVILYAVVSNIKSKFNRII 119
+ + L L+ +R ++ DEYGV+ + S ++F +I+
Sbjct: 1297 YAIRLDLY-SRDEYQDEYGVLQEEIESTFSNRFLKIL 1332
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 550 IMKRV--FKKALDEVTC-LDWSXCSRLLSVGSKDTTTKIHTVEYLENITMYF 696
+M+RV KK E C L+W+ + G D I ++ LEN Y+
Sbjct: 277 MMRRVHTIKKVHQEQVCGLEWNYDGTQFASGGNDNLVCIFDIDSLENKKFYW 328
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 410 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 508
++H + V VKFS +GKY A C+ V
Sbjct: 306 LVHTLEHPSVVCCVKFSNNGKYLATGCNQAANV 338
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 293 LSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPD 466
L E TA+ I+PN + + ++ S++ ++V K+ V ++ FSPD
Sbjct: 438 LKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPD 495
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 471 NTLPCAAIIQYSCDSTGTYHRRI 539
+T+PCAA++ + C + G R++
Sbjct: 397 HTIPCAAVLCFFCTTVGMVLRKL 419
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 601 WSXCSRLLSVGSKDTTTKIHTV 666
WS SRLL S+DTT K+ V
Sbjct: 439 WSTDSRLLVSSSQDTTLKVWDV 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,830
Number of Sequences: 5004
Number of extensions: 61702
Number of successful extensions: 221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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