Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1451
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 60 2e-09
05_07_0039 - 27239362-27239478,27240570-27241463 32 0.40
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 32 0.53
09_02_0319 + 7217262-7217372,7218026-7218121,7218642-7218771,721... 31 1.2
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 30 1.6
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 30 1.6
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 30 2.2
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 30 2.2
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 30 2.2
07_03_0971 + 23038409-23039134,23040321-23040611 29 2.8
01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141... 29 5.0
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/79 (40%), Positives = 44/79 (55%)
Frame = +2
Query: 266 NLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVN 445
+L + S TL FES N T + ++P+G LL+V + G A +L VLH+ FK +
Sbjct: 39 DLSASSSLTLPFESSSNVTRLAVSPSGDFLLSVDDAGRALYANLGRRAVLHRIAFKSAPS 98
Query: 446 AVKFSPDGKYFAVCCDNTV 502
AV+FSPDG AV V
Sbjct: 99 AVRFSPDGNLIAVAVGKLV 117
Score = 44.4 bits (100), Expect = 9e-05
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 156 NYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNR 254
NY+F NLLG YR GD +F+ D + ++S VGNR
Sbjct: 2 NYRFHNLLGAPYRGGDAVFAGDSSVLLSAVGNR 34
>05_07_0039 - 27239362-27239478,27240570-27241463
Length = 336
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 242 SW*Q-ITIYNLKQNKSNTLSFESHYNYT-AVDIAPNGMTLLAVTEKGEAQIISLTTSVVL 415
SW + + ++NL K T E H Y AV ++P+G + + G + LT +L
Sbjct: 187 SWDRSVKVWNLTNCKLRT-KLEGHNGYVNAVAVSPDGSLCASGGKDGTTLLWDLTEGKML 245
Query: 416 HKYKFKQQVNAVKFSPDGKYFAVCCDNTV 502
+K ++++ FSP+ + +++V
Sbjct: 246 YKLDAGAIIHSLCFSPNRYWLCAATEDSV 274
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 559 RVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVEYLENITMYFAQRT 708
R+ L +V C+ W ++ GS D T ++ V+ E I M+ R+
Sbjct: 360 RIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRS 409
>09_02_0319 +
7217262-7217372,7218026-7218121,7218642-7218771,
7219137-7219225,7219764-7219832,7220229-7220286,
7220374-7220489
Length = 222
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 341 NGMTLLAVTEK-GEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAV 484
+G T +AV K E I+ + LHK+KF ++N + ++ G F +
Sbjct: 132 HGGTQIAVGNKEDELTIVDVRKLKALHKFKFNYEINEIAWNKTGDLFFI 180
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 430
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 105 IKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKGH 164
Query: 431 KQQVNAVKFSPDGKY 475
+ VNA++F+PDG++
Sbjct: 165 TRGVNAIRFTPDGRW 179
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 416 HKYKFKQQVNAVKFSPDGKYFA 481
H K V KFSPDGKYFA
Sbjct: 122 HVSDHKNVVRCAKFSPDGKYFA 143
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 565 FKKALDEVTCLDWSXCSRLLSVGSKDTTTKI 657
F+ + +V + WS SRLL GSKD+T K+
Sbjct: 423 FRGHVADVYQISWSADSRLLLSGSKDSTLKV 453
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 565 FKKALDEVTCLDWSXCSRLLSVGSKDTTTKI 657
F+ + +V + WS SRLL GSKD+T K+
Sbjct: 372 FRGHVADVYQISWSADSRLLLSGSKDSTLKV 402
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 413 LHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 508
+HKY F ++ AV+ S D YF V + T+ V
Sbjct: 296 IHKYNFTSEIRAVRLSKD--YFVVVLEKTINV 325
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 538 YRPFIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKI 657
YRP+ R V+C+ +S C RLL+ S D T +
Sbjct: 12 YRPYRQVRAATPHSRAVSCVRFSPCGRLLATASLDGTVAL 51
>01_01_0166 +
1412918-1413309,1413845-1414006,1414534-1414720,
1415221-1415646,1416028-1416036,1416361-1416768,
1417397-1417654
Length = 613
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 586 VTCLDWSXCSRLLSVGSKDTTTKIHTVE 669
+ CL WS +RL++ GS DT ++ ++
Sbjct: 541 INCLAWSPDNRLVATGSLDTCAIVYEID 568
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,779
Number of Sequences: 37544
Number of extensions: 355166
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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