Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1451
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20) 35 0.077
SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078) 34 0.10
SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16) 31 1.3
SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22) 30 1.7
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_13408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 29 5.1
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 28 6.7
SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20) 28 6.7
SB_17407| Best HMM Match : PADR1 (HMM E-Value=2) 28 8.9
SB_2405| Best HMM Match : PADR1 (HMM E-Value=2) 28 8.9
>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
Length = 645
Score = 34.7 bits (76), Expect = 0.077
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 323 AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF-KQQVNAVKFSPDGKYFAV 484
AV +P+G ++ G I+ T + YK K++++ +KFSPDGK+ AV
Sbjct: 191 AVTYSPDGGSIAVGQNDGGFLILEAKTLEKVVGYKDRKEEISDIKFSPDGKFLAV 245
>SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)
Length = 360
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 293 LSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSP-DG 469
LSF Y A + NG LL+ + + + T KY+F+ ++ V+F P +
Sbjct: 46 LSFSHRYESRATTWSRNGRKLLSGSNDWNVSVWDILTGECDQKYRFQSPISKVQFHPRNN 105
Query: 470 KYFAVC 487
K VC
Sbjct: 106 KVILVC 111
>SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 331 INSCIIVVTFK**SVTFILFQIIYGYLLPTGLITQFPSLLKSTSP 197
I+ C++++ VTF +F ++YG+ GL T F LL + P
Sbjct: 422 ISGCMLLIWLAHDYVTFSVFAVLYGFGNGVGLTTMFLLLLNTVKP 466
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 320 TAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-FKQQVNAVKFSPDGKYFAVCCDN 496
++V + P+G L++ E G + +T L +K +V+FSPDG + C +
Sbjct: 1192 SSVCVNPSGTLLVSGHEDGGCMLYDITAGRTLQFFKPHTADCRSVRFSPDGHHLLSCSYD 1251
Query: 497 T 499
T
Sbjct: 1252 T 1252
>SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)
Length = 675
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 323 AVDIAPNGMTLLAVTEKGEAQIISLTT--SVVLHKYKFKQQVNAVKFSPDGKYFAVCC-D 493
AV ++ T+ + G I ++ + S+ K +++++ +K+SPDGK AV D
Sbjct: 394 AVSVSSTADTIAVGYKDGSFGIFNVKSGESIFFKKRCAQEKISDLKYSPDGKCLAVASHD 453
Query: 494 NTVFV 508
N ++V
Sbjct: 454 NNIYV 458
>SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)
Length = 327
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 288 TLYHLKVTTIIQ-LLILHQME*HCWLLRKRVKHKL*VLQLLWCYT 419
T+ HL + T+ + ++I+H M+ CW+ +KR + L +W ++
Sbjct: 103 TVLHLLIGTLDRYVMIVHAMKYRCWVTKKRARR---ALAFIWVFS 144
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 317 YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 496
YT + +P+G L + + I S T ++H ++ + V++SP G A C N
Sbjct: 337 YT-ISFSPDGRYLASGSFDKRVHIWSTQTGNLVHSFQGSGGIFEVQWSPRGDKLAACFSN 395
Query: 497 TVF 505
F
Sbjct: 396 NTF 398
>SB_13408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 580 DEVTCLDWSXCSRLLSVGSKDTTTKIHTV 666
+EVT L++ C+ +L GSKD T K+ +
Sbjct: 27 EEVTALEFHPCAPVLISGSKDCTVKLFDI 55
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +2
Query: 257 TIYNLKQ-NKSNTLSFESHYNYTAVDIAPNGMTL-LAVTEKGEAQIISLTT-SVVLHKYK 427
TI+ L N TLS S +AV + P G L T G+ + + S +L +
Sbjct: 1191 TIHELPDFNLIQTLSI-SQQTISAVAVNPTGEWLAFGCTSLGQLLVWEWQSESYILKQQG 1249
Query: 428 FKQQVNAVKFSPDGKYFAVCCDN 496
+N + +SPDG Y A D+
Sbjct: 1250 HYYDMNVLAYSPDGNYIATGGDD 1272
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 568 KKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVE 669
+K LD + CL W S+ + + TTK H V+
Sbjct: 286 EKLLDYLVCLKWQMKGDARSMLTNELTTKFHAVQ 319
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 568 KKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVE 669
+K LD + CL W S+ + + TTK H V+
Sbjct: 542 EKLLDYLVCLKWQMKGDARSMLTNELTTKFHAVQ 575
>SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20)
Length = 215
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 302 ESHYNYTAVDIAPNGMTLLAVTEKGEAQIIS-LTTSVVLHKYKFKQQ-VNAVKFSPDGKY 475
E H ++ +PNG L+A E+ + ++ ++ K K VN V+F D +
Sbjct: 67 EGHGAVFNIEFSPNGSLLVAACERASFLVFDPVSQQLIKSKRKAHSDCVNCVRFL-DSRS 125
Query: 476 FAVCCDN 496
F C D+
Sbjct: 126 FLTCSDD 132
>SB_17407| Best HMM Match : PADR1 (HMM E-Value=2)
Length = 365
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 522 TYHR-RIPALHHETCLQESPRRSDVSGLVXLLETPVGRIERH--DNEDSHRRIFREHHYV 692
+YHR ++ LHHE C+ +P S+ E + RI+R+ D + R + HYV
Sbjct: 121 SYHRPQLRVLHHECCIHLNPTPSE--------ELIIARIKRYAIDYKQKGRTKYTGSHYV 172
>SB_2405| Best HMM Match : PADR1 (HMM E-Value=2)
Length = 214
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 522 TYHR-RIPALHHETCLQESPRRSDVSGLVXLLETPVGRIERH--DNEDSHRRIFREHHYV 692
+YHR ++ LHHE C+ +P S+ E + RI+R+ D + R + HYV
Sbjct: 10 SYHRPQLRVLHHECCIHLNPTPSE--------ELIIARIKRYAIDYKQKGRTKYTGSHYV 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,444,586
Number of Sequences: 59808
Number of extensions: 466442
Number of successful extensions: 1269
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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