Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1451
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 34 0.090
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 32 0.48
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 30 1.5
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 30 1.5
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p... 29 2.6
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 29 2.6
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 29 2.6
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 29 3.4
AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/82 (28%), Positives = 49/82 (59%)
Frame = +2
Query: 251 QITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF 430
+++I++L+ N S TL + +YN + I+P+G LLA E+G + L + ++ ++
Sbjct: 36 KLSIFDLRNNTSKTLDIDCNYNIKRLSISPSGYHLLASDERGVVHFVHLLSEFKIYTFRS 95
Query: 431 KQQVNAVKFSPDGKYFAVCCDN 496
+ + ++++SPD A+C +N
Sbjct: 96 NKPIGSLQWSPDATRVAICREN 117
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +3
Query: 147 MKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNR 254
M N+K N +GTVYR G V FSKDG VISP+GN+
Sbjct: 1 MDTNFKLSNCIGTVYRDGQVAFSKDGYSVISPIGNK 36
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 538 YRPFIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVEYLENITMY 693
Y PF + R +K + D + +DWS + LL G +D ++ + +N+ ++
Sbjct: 133 YNPFSLSRTYKLSSDSLKTIDWSDDANLLVSGGEDRVVRVVGAKDFKNLFIH 184
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 556 KRVFKKALDEVTCLDWSXCSRLLSV-GSKDTTTKIHTVEYLENITMYFAQR 705
K VFK TCLDW + + V GS+D T K + + +N + F+ R
Sbjct: 137 KSVFKSHERSATCLDWHATTPYILVSGSRDCTVKSYDMRVKDNHQLTFSDR 187
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 547 FIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVEYLENI 684
++ K++ K VTCLDW + LL+VGS D ++ + Y++ +
Sbjct: 138 WVSKQIKKPIRSTVTCLDWHSNNVLLAVGSCDFKCRVFSA-YVKEV 182
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 535 EYRPFIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDT 645
++ + +RV + EV C+DW L++ GS+DT
Sbjct: 245 DFARYTEERVLRGHGAEVRCIDWHPTKGLIATGSRDT 281
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 311 YNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVV 412
+N+T +D A G LLA ++ G ++I L+ SV+
Sbjct: 326 FNHTVMDFAWCGRNLLACSQDGTVKVIHLSESVI 359
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 311 YNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVV 412
+N+T +D A G LLA ++ G ++I L+ SV+
Sbjct: 614 FNHTVMDFAWCGRNLLACSQDGTVKVIHLSESVI 647
>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
protein C53A5.2 protein.
Length = 1150
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 260 WLSVTNWTDNAISIFTEEHITFTVNCSE 177
WLS N +NA+ + T + + NCSE
Sbjct: 315 WLSTKNDWNNAVKVLTRQGSVYVPNCSE 342
>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
protein C53A5.2 protein.
Length = 1150
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 260 WLSVTNWTDNAISIFTEEHITFTVNCSE 177
WLS N +NA+ + T + + NCSE
Sbjct: 315 WLSTKNDWNNAVKVLTRQGSVYVPNCSE 342
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 526 ITGEYRPFIMKRVFKKALDEVTCLDWSXCSR 618
+TG+ +PF +K +DE+ CL++S R
Sbjct: 1584 MTGKGKPFNSTEAIQKLIDELNCLEYSQIER 1614
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 526 ITGEYRPFIMKRVFKKALDEVTCLDWSXCSR 618
+TG+ +PF +K +DE+ CL++S R
Sbjct: 1584 MTGKGKPFNSTEAIQKLIDELNCLEYSQIER 1614
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 526 ITGEYRPFIMKRVFKKALDEVTCLDWSXCSR 618
+TG+ +PF +K +DE+ CL++S R
Sbjct: 1584 MTGKGKPFNSTEAIQKLIDELNCLEYSQIER 1614
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 263 YNLKQNKSNTLSFESHYNYTAVDI--APNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQ 436
Y+L+ + + ES + Y+ D+ +P G L++ + A ++ + L +YK ++
Sbjct: 173 YDLRNPDTPIHTNESVHRYSVQDLQLSPRGDFLISASRDKTAALLDVNDLKKLKQYKSER 232
Query: 437 QVNAVKFSPD 466
VN+ SP+
Sbjct: 233 PVNSACISPN 242
>AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical
protein Y45F10D.7 protein.
Length = 893
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 347 MTLLAVTEKGEAQIISLTTSVVLHKYKFK---QQVNAVKFSPDGKYFAVCCDNTVFV 508
+ L+A+ E G+ +I + T F+ +VNA+ FS DGK+ V DN ++
Sbjct: 525 VALVAIAENGKESVILVDTVCHRVARAFETVGNKVNAMTFSSDGKWLLV-ADNDSYI 580
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 546 LHHETCLQESPRRSDVSGLVXLLETPVGRIERHDNEDSHRRIFREHHYVFRSADTXIKL 722
LHHE+CL+ R SDV ++ET + E++D ++ + +EH + A I++
Sbjct: 628 LHHESCLR--MRISDVDHNSLVIETERLQSEKNDLKEK-AAVIKEHETTSKEALLKIEI 683
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 546 LHHETCLQESPRRSDVSGLVXLLETPVGRIERHDNEDSHRRIFREHHYVFRSADTXIKL 722
LHHE+CL+ R SDV ++ET + E++D ++ + +EH + A I++
Sbjct: 628 LHHESCLR--MRISDVDHNSLVIETERLQSEKNDLKEK-AAVIKEHETTSKEALLKIEI 683
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,845
Number of Sequences: 27780
Number of extensions: 352367
Number of successful extensions: 842
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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