Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1451
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 65 4e-11
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 65 4e-11
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.78
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.78
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 31 1.0
At5g41300.1 68418.m05019 receptor-like protein kinase-related co... 31 1.0
At5g06590.1 68418.m00744 expressed protein 31 1.0
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 29 2.4
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 4.1
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 29 4.1
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 28 7.2
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 28 7.2
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 28 7.2
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 28 7.2
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 28 7.2
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 27 9.6
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 27 9.6
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 27 9.6
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 27 9.6
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/78 (41%), Positives = 49/78 (62%)
Frame = +2
Query: 251 QITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF 430
++++ +L +N S TL E+ N + +P+G LLAV E+ I+L VVLH+ F
Sbjct: 33 RVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINLPRRVVLHRITF 92
Query: 431 KQQVNAVKFSPDGKYFAV 484
K +V A+KFSP+GK+ AV
Sbjct: 93 KDKVGALKFSPNGKFIAV 110
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 159 YKFQNLLGTVYRKGDVLFSKDGNCVISPVGNR 254
++F+NLLG YR G+ + +K+ +ISPVGNR
Sbjct: 3 FRFENLLGAPYRGGNAVITKNTQ-LISPVGNR 33
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 544 PFIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTV 666
PF R F + D+V L+WS S L VGS+D + T+
Sbjct: 130 PFERVRTFANSDDKVVSLEWSLDSDYLLVGSRDLAARAFTI 170
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/78 (41%), Positives = 49/78 (62%)
Frame = +2
Query: 251 QITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF 430
++++ +L +N S TL E+ N + +P+G LLAV E+ I+L VVLH+ F
Sbjct: 33 RVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINLPRRVVLHRITF 92
Query: 431 KQQVNAVKFSPDGKYFAV 484
K +V A+KFSP+GK+ AV
Sbjct: 93 KDKVGALKFSPNGKFIAV 110
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 159 YKFQNLLGTVYRKGDVLFSKDGNCVISPVGNR 254
++F+NLLG YR G+ + +K+ +ISPVGNR
Sbjct: 3 FRFENLLGAPYRGGNAVITKNTQ-LISPVGNR 33
Score = 35.1 bits (77), Expect = 0.048
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 544 PFIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVEYLENI 684
PF R F + D+V L+WS S L VGS+D ++ V L+ +
Sbjct: 130 PFERVRTFANSDDKVVSLEWSLDSDYLLVGSRDLAARLFCVRKLKGV 176
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +2
Query: 254 ITIYNLKQNKSNTLSFESHYN-YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 427
+ I+++K +++N F+ H TA+ + NG L E G + L L +K
Sbjct: 377 VKIWDVK-SQANVAKFDGHTGEVTAISFSENGYFLATAAEDG----VRLWDLRKLRNFKS 431
Query: 428 -FKQQVNAVKFSPDGKYFAVCCDN 496
N+V+F P G Y + +
Sbjct: 432 FLSADANSVEFDPSGSYLGIAASD 455
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +2
Query: 254 ITIYNLKQNKSNTLSFESHYN-YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 427
+ I+++K +++N F+ H TA+ + NG L E G + L L +K
Sbjct: 377 VKIWDVK-SQANVAKFDGHTGEVTAISFSENGYFLATAAEDG----VRLWDLRKLRNFKS 431
Query: 428 -FKQQVNAVKFSPDGKYFAVCCDN 496
N+V+F P G Y + +
Sbjct: 432 FLSADANSVEFDPSGSYLGIAASD 455
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 562 VFKKALDEVTCLDWSXCSRLLSVGSKDTTTKI 657
VF+ + V + WS SRLL GSKD+T KI
Sbjct: 397 VFRGHVGPVYQVSWSADSRLLLSGSKDSTLKI 428
>At5g41300.1 68418.m05019 receptor-like protein kinase-related
contains weak similarity to receptor-like protein kinase
homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
contains Pfam profile: PF01657 Domain of unknown
function DUF26
Length = 287
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 86 NNCIKNHTIFIVKLCSVHK 30
NNC+KN TI IVK C+ H+
Sbjct: 98 NNCVKNATIEIVKNCTNHR 116
>At5g06590.1 68418.m00744 expressed protein
Length = 314
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 679 SLNIRRCESSLSCLSIRPTGVSSRXTSPDTSLR 581
SLN++ S +CL+ TGV+ PDTSL+
Sbjct: 155 SLNLKNLGLSDACLAYLATGVNDNVKDPDTSLK 187
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 326 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVC 487
+D+ PN L+AV+EKG + + T + H+ + V ++ F VC
Sbjct: 593 IDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVC 646
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 532 GEYRPFIMKRVFKKALDEVTCLDWSXCSRLLSVGSKDTTTKIHTVE 669
GE RP + F EV C+ W LL+ S D+T KI ++
Sbjct: 436 GETRP---AKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIK 478
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 ITIYNLKQNKSNTLSFESHYNYTAVDI--APNGMTLLAVTEKGEAQIISLTTSVVLHKYK 427
+ ++N+ N + H+N D+ + G++LL+ +++ + V +K
Sbjct: 185 VYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDVERGVETQSFK 244
Query: 428 FKQQVNAVKFSPD 466
+ V VKF PD
Sbjct: 245 EDEVVGVVKFHPD 257
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 338 PNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCD-NTVFV*Q 514
P+G + E I+ + LH+ KF +VN + ++ G +F + TV V
Sbjct: 118 PDGTHVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLS 177
Query: 515 HRYISPANT 541
+ + P +T
Sbjct: 178 YPSLKPLDT 186
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 430
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 431 KQQVNAVKFSPDGKY 475
+ VN ++F+PDG++
Sbjct: 143 TRGVNVLRFTPDGRW 157
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 430
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 431 KQQVNAVKFSPDGKY 475
+ VN ++F+PDG++
Sbjct: 143 TRGVNVLRFTPDGRW 157
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 353 LLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTV 502
L + T+ G+ ++ + + ++H + K V + + S DG+Y ++V
Sbjct: 156 LSSCTDTGDIRLWDIRSDKIVHTLETKSPVTSAEVSQDGRYITTADGSSV 205
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 254 ITIYNLKQNKSNTLSFESHY-NYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 427
I +++L+++K +F H N +AV+ P G L + + ++ + YK
Sbjct: 31 IKLWDLEESKM-VRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKG 89
Query: 428 FKQQVNAVKFSPDGKY 475
+ ++ ++FSPDG++
Sbjct: 90 HTRGISTIEFSPDGRW 105
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 296 SFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKY 475
S++S + N + + + G +++SL +LH + QQ+ F+ D +
Sbjct: 354 SYQSSLQAPGKNFYLNRLQYIEQSSTGCQRVVSLPE--LLHPVESIQQIFLATFTSDILW 411
Query: 476 FAVCCD 493
F CCD
Sbjct: 412 FLTCCD 417
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 293 LSFESHYNYT-AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK----FKQQVNAVKF 457
LS H N+ V AP+G + V+ + I T +L + K + AV +
Sbjct: 181 LSSREHSNFVNCVRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSW 240
Query: 458 SPDGK 472
SPDGK
Sbjct: 241 SPDGK 245
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 341 NGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKY 475
N + + + A++ T VLH ++ K V A FS D KY
Sbjct: 72 NALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKY 116
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +2
Query: 293 LSFESHYNYTAVDIA--PNG-MTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSP 463
LS E + VDI P+G + L+ + ++ + + ++ VN SP
Sbjct: 199 LSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFTRVSEFALDWSVNNTSVSP 258
Query: 464 DGKYFAVCCDNT 499
DGK AV D+T
Sbjct: 259 DGKLLAVVGDST 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,687
Number of Sequences: 28952
Number of extensions: 306899
Number of successful extensions: 819
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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